PDBsum entry 2cde

Pore analysis for: 2cde calculated with

MOLE 2.0

PDB id

2cde

Pores calculated on whole structure

Pores calculated excluding ligands

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12 pores, coloured by radius

12 pores, coloured by radius

12 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.28

1.62

27.1

-0.57

0.02

10.0

79

1

3

2

2

2

0

0

2

1.19

1.39

62.8

-1.44

-0.33

19.4

82

4

3

5

4

3

0

0

3

1.11

1.49

65.3

-1.28

-0.33

17.1

85

6

2

8

4

3

0

0

4

3.10

3.99

72.6

-1.64

-0.37

15.4

85

4

2

5

2

3

2

0

5

2.84

2.99

75.4

-1.68

-0.52

10.2

89

2

6

12

2

1

4

0

6

2.06

3.16

82.6

-2.00

-0.60

16.6

83

4

5

7

2

0

5

0

7

1.16

1.33

88.9

-1.70

-0.50

19.2

81

7

6

5

3

3

0

0

8

1.43

1.94

117.2

-2.00

-0.55

12.4

87

6

6

19

4

1

5

0

9

2.26

2.50

120.2

-2.19

-0.72

18.6

89

7

11

17

2

1

3

0

10

1.18

1.31

144.6

-1.67

-0.52

17.1

85

10

11

16

5

6

3

0

11

1.59

1.67

162.1

-2.29

-0.70

18.3

87

11

12

24

4

1

4

0

12

1.66

2.26

171.6

-2.11

-0.66

19.9

87

11

15

17

2

2

3

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.