PDBsum entry 2cdb

Pore analysis for: 2cdb calculated with

MOLE 2.0

PDB id

2cdb

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

5 pores, coloured by radius

7 pores, coloured by radius

7 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.63

1.71

65.2

-2.08

-0.36

21.1

77

11

4

5

2

3

1

1

EDO 1367 B

2

1.62

1.73

103.8

-1.64

-0.42

21.4

73

10

11

6

6

3

2

2

3

1.23

1.26

26.1

3.19

1.05

2.4

81

1

1

0

11

0

0

0

4

2.44

3.18

31.4

0.14

0.14

18.4

79

4

4

0

4

2

0

1

BGC 1368 B NAP 1369 B

5

1.23

1.45

39.2

-0.01

-0.10

12.7

83

3

5

1

5

2

1

1

BGC 1368 D NAP 1369 D

6

1.15

3.13

33.6

2.28

0.78

6.8

80

3

1

0

11

0

1

0

7

1.61

1.80

41.0

-0.16

-0.05

15.9

81

5

4

1

6

2

1

1

BGC 1368 C NAP 1369 C

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.