PDBsum entry 2c67

Tunnel analysis for: 2c67 calculated with

MOLE 2.0

PDB id

2c67

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

1 tunnel, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.33

1.97

34.3

-0.57

0.06

5.5

71

0

1

2

5

5

1

0

FAD 1497 B RM1 1498 B

2

1.33

1.97

35.4

-0.16

0.21

8.3

69

1

1

1

5

5

1

0

FAD 1497 B RM1 1498 B

3

1.32

1.94

35.8

-0.23

0.23

9.0

72

1

1

2

5

5

1

0

FAD 1502 A RM1 1503 A

4

1.20

2.77

51.3

-0.44

-0.24

10.2

82

2

1

4

6

3

3

0

FAD 1497 B

5

1.16

2.67

53.5

-0.41

-0.13

11.3

77

3

1

3

7

5

3

1

FAD 1497 B

6

1.21

2.72

55.9

-0.42

-0.12

11.4

78

3

2

3

7

5

3

1

FAD 1502 A

7

1.30

2.00

56.2

-0.06

0.47

6.2

74

2

2

3

7

8

1

0

FAD 1497 B RM1 1498 B

8

1.32

1.99

57.0

0.29

0.60

8.0

73

3

2

2

8

8

1

0

FAD 1502 A RM1 1503 A

9

1.31

2.01

57.2

0.25

0.58

7.8

72

3

2

2

7

8

1

0

FAD 1497 B RM1 1498 B

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.