PDBsum entry 2c5d Go to PDB code:  Tunnel analysis for: 2c5d calculated with MOLE 2.0 PDB id 2c5d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.54 1.54 27.6 -0.95 -0.29 12.9 76 4 2 1 1 3 1 2   2 1.56 1.56 28.0 -1.08 -0.30 14.6 76 4 2 1 1 3 1 2   3 1.25 1.76 32.1 -1.16 -0.36 14.0 78 4 3 2 0 3 0 2   4 1.16 2.62 18.4 0.45 0.19 6.5 75 1 1 1 6 2 1 0   5 1.15 2.62 17.9 0.54 0.13 4.3 76 2 0 1 6 2 0 0   6 1.14 2.10 15.6 0.88 0.17 7.8 74 0 1 0 3 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.