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PDBsum entry 2c1c

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Hydrolase PDB id
2c1c
Contents
Protein chains
312 a.a.
Metals
_Y1 ×2
_ZN ×2
Waters ×347

References listed in PDB file
Key reference
Title Structural basis of the resistance of an insect carboxypeptidase to plant protease inhibitors.
Authors A.Bayés, M.Comellas-Bigler, M.Rodríguez de la vega, K.Maskos, W.Bode, F.X.Aviles, M.A.Jongsma, J.Beekwilder, J.Vendrell.
Ref. Proc Natl Acad Sci U S A, 2005, 102, 16602-16607. [DOI no: 10.1073/pnas.0505489102]
PubMed id 16260742
Abstract
Corn earworm (Helicoverpa zea), also called tomato fruitworm, is a common pest of many Solanaceous plants. This insect is known to adapt to the ingestion of plant serine protease inhibitors by using digestive proteases that are insensitive to inhibition. We have now identified a B-type carboxypeptidase of H. zea (CPBHz) insensitive to potato carboxypeptidase inhibitor (PCI) in corn earworm. To elucidate the structural features leading to the adaptation of the insect enzyme, the crystal structure of the recombinant CPBHz protein was determined by x-ray diffraction. CPBHz is a member of the A/B subfamily of metallocarboxypeptidases, which displays the characteristic metallocarboxypeptidase alpha/beta-hydrolase fold, and does not differ essentially from the previously described Helicoverpa armigera CPA, which is very sensitive to PCI. The data provide structural insight into several functional properties of CPBHz. The high selectivity shown by CPBHz for C-terminal lysine residues is due to residue changes in the S1' substrate specificity pocket that render it unable to accommodate the side chain of an arginine. The insensitivity of CPBHz to plant inhibitors is explained by the exceptional positioning of two of the main regions that stabilize other carboxypeptidase-PCI complexes, the beta8-alpha9 loop, and alpha7 together with the alpha7-alpha8 loop. The rearrangement of these two regions leads to a displacement of the active-site entrance that impairs the proper interaction with PCI. This report explains a crystal structure of an insect protease and its adaptation to defensive plant protease inhibitors.
Figure 1.
Fig. 1. Stereo ribbon plot representation of CPBHz. The two histidines and the glutamic acid residues coordinating the zinc atom are shown as stick models in green, the zinc atom is shown as a silver sphere, and the single disulfide bridge present in the structure is shown in blue. The polypeptide fold consists of a core of eight twisted -sheets surrounded by eight -helices. Figure generated with MOLSCRIPT (31) and RASTER 3D (32).
Figure 3.
Fig. 3. Stereoview of a structural superimposition of H. zea carboxypeptidase B in orange, human carboxypeptidase B in green, and H. armigera carboxypeptidase A, in purple. Trp-277A of CPBHz and residues Trp-277B and Tyr-277 in human CPAHa and CPBh, respectively, are represented as stick models; the arrow indicates the entrance to the active-site cleft. The zinc ion is shown in silver. The orientation of the molecule is the same as in Fig. 1.
PROCHECK
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