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PDBsum entry 2c12
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Tunnel analysis for: 2c12 calculated with  MOLE 2.0
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PDB id
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2c12
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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9 tunnels,
coloured by tunnel radius |
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20 tunnels,
coloured by
tunnel radius
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20 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.23 |
1.23 |
42.0 |
-0.87 |
-0.22 |
17.8 |
80 |
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6 |
5 |
1 |
5 |
1 |
1 |
0 |
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FAD 1432 A
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2 |
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1.22 |
1.22 |
45.9 |
-1.23 |
-0.29 |
23.5 |
76 |
7 |
6 |
0 |
6 |
1 |
2 |
0 |
FAD 1433 D
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3 |
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1.25 |
1.25 |
46.3 |
-1.54 |
-0.44 |
19.4 |
86 |
8 |
6 |
4 |
3 |
0 |
0 |
0 |
FAD 1432 A
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4 |
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1.22 |
1.22 |
51.1 |
-1.97 |
-0.47 |
26.6 |
82 |
10 |
7 |
3 |
4 |
0 |
1 |
0 |
FAD 1433 D
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5 |
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1.24 |
1.24 |
63.3 |
-2.30 |
-0.53 |
34.0 |
80 |
11 |
12 |
1 |
5 |
1 |
1 |
0 |
FAD 1432 B GOL 1434 B GOL 1435 B GOL 1432 D
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6 |
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1.23 |
1.23 |
63.6 |
-2.54 |
-0.63 |
34.1 |
85 |
12 |
14 |
4 |
3 |
0 |
0 |
0 |
GOL 1435 B FAD 1433 C GOL 1435 C GOL 1432 D
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7 |
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1.23 |
1.23 |
65.2 |
-2.50 |
-0.62 |
33.2 |
84 |
13 |
13 |
4 |
3 |
0 |
0 |
0 |
FAD 1432 B GOL 1434 B GOL 1435 B GOL 1432 D
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8 |
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1.25 |
1.25 |
71.4 |
0.27 |
-0.05 |
9.7 |
83 |
3 |
9 |
4 |
14 |
2 |
2 |
0 |
FAD 1432 A GOL 1433 A
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9 |
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1.25 |
1.25 |
73.8 |
-0.31 |
-0.14 |
15.4 |
80 |
4 |
10 |
4 |
15 |
3 |
3 |
0 |
FAD 1433 D SPM 1434 D
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10 |
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1.20 |
1.28 |
84.3 |
-0.60 |
-0.29 |
15.0 |
86 |
6 |
8 |
6 |
9 |
4 |
1 |
0 |
FAD 1433 D SPM 1434 D GOL 1435 D
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11 |
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1.25 |
2.60 |
88.8 |
0.43 |
0.08 |
12.1 |
81 |
3 |
9 |
4 |
23 |
3 |
3 |
0 |
GOL 1437 C FAD 1433 D SPM 1434 D GOL 1436 D
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12 |
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1.28 |
1.27 |
91.9 |
-0.98 |
-0.30 |
21.8 |
81 |
8 |
16 |
5 |
13 |
3 |
2 |
0 |
FAD 1432 B SPM 1433 B GOL 1434 B GOL 1435 B PE4
1436 B GOL 1432 D
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13 |
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1.26 |
1.26 |
92.9 |
-0.92 |
-0.22 |
22.9 |
82 |
8 |
17 |
5 |
14 |
2 |
2 |
0 |
GOL 1435 B FAD 1433 C SPM 1434 C GOL 1435 C GOL
1432 D
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14 |
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1.34 |
1.59 |
121.8 |
-0.18 |
-0.07 |
17.4 |
83 |
9 |
13 |
5 |
24 |
3 |
2 |
0 |
FAD 1432 A GOL 1433 A GOL 1432 C GOL 1437 C
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15 |
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1.28 |
2.30 |
21.2 |
0.40 |
0.17 |
15.7 |
83 |
1 |
2 |
2 |
7 |
1 |
0 |
0 |
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16 |
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1.27 |
2.24 |
21.3 |
0.82 |
0.29 |
12.6 |
83 |
1 |
3 |
2 |
7 |
1 |
0 |
0 |
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17 |
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1.14 |
1.52 |
22.1 |
1.39 |
0.45 |
7.9 |
83 |
1 |
2 |
2 |
7 |
1 |
0 |
0 |
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18 |
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1.31 |
1.57 |
15.6 |
-0.51 |
0.10 |
9.3 |
80 |
1 |
0 |
2 |
2 |
2 |
0 |
0 |
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19 |
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1.33 |
2.11 |
16.8 |
-0.97 |
-0.34 |
22.1 |
80 |
2 |
5 |
1 |
3 |
1 |
0 |
0 |
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20 |
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1.34 |
1.60 |
18.4 |
-0.79 |
-0.37 |
19.1 |
77 |
2 |
5 |
0 |
3 |
2 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program