 |
PDBsum entry 2bs3
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 2bs3 calculated with MOLE 2.0
|
PDB id
|
|
|
|
2bs3
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
8 pores,
coloured by radius |
 |
18 pores,
coloured by radius
|
18 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.77 |
1.77 |
28.7 |
-2.49 |
-0.47 |
27.8 |
77 |
 |
3 |
3 |
2 |
2 |
2 |
1 |
0 |
 |
|
 |
 |
2 |
 |
1.17 |
1.58 |
31.8 |
0.24 |
0.03 |
14.0 |
80 |
3 |
1 |
0 |
5 |
2 |
0 |
0 |
HEM 1256 F
|
 |
3 |
 |
1.56 |
1.56 |
32.0 |
1.82 |
0.79 |
6.9 |
77 |
2 |
0 |
1 |
9 |
3 |
0 |
0 |
HEM 1255 F HEM 1256 F
|
 |
4 |
 |
1.79 |
1.79 |
34.7 |
-1.82 |
-0.45 |
26.7 |
81 |
4 |
4 |
2 |
5 |
1 |
0 |
0 |
|
 |
5 |
 |
1.24 |
2.51 |
44.5 |
-1.73 |
-0.28 |
26.6 |
85 |
9 |
8 |
4 |
7 |
2 |
1 |
0 |
|
 |
6 |
 |
1.19 |
1.60 |
47.9 |
0.69 |
0.27 |
11.9 |
81 |
4 |
1 |
1 |
10 |
3 |
0 |
0 |
HEM 1255 F HEM 1256 F
|
 |
7 |
 |
1.19 |
1.50 |
53.9 |
-1.55 |
-0.26 |
23.7 |
83 |
7 |
5 |
4 |
5 |
2 |
2 |
0 |
|
 |
8 |
 |
1.34 |
1.36 |
63.3 |
-2.07 |
-0.56 |
24.8 |
78 |
7 |
4 |
4 |
4 |
1 |
0 |
0 |
HEM 1255 F
|
 |
9 |
 |
1.32 |
1.33 |
68.9 |
-0.83 |
0.03 |
21.3 |
79 |
8 |
4 |
4 |
12 |
4 |
0 |
0 |
HEM 1255 F HEM 1256 F
|
 |
10 |
 |
1.35 |
1.76 |
72.3 |
-0.94 |
-0.32 |
17.9 |
86 |
9 |
6 |
7 |
8 |
4 |
0 |
0 |
FAD 1656 A CIT 1657 A
|
 |
11 |
 |
1.52 |
1.61 |
75.6 |
-1.02 |
-0.24 |
19.6 |
84 |
10 |
6 |
8 |
9 |
5 |
0 |
0 |
FAD 1656 A CIT 1657 A
|
 |
12 |
 |
1.28 |
1.78 |
75.8 |
-0.96 |
-0.39 |
15.0 |
88 |
9 |
6 |
8 |
7 |
2 |
1 |
0 |
FAD 1656 D CIT 1657 D
|
 |
13 |
 |
1.36 |
1.37 |
79.2 |
-1.40 |
-0.19 |
23.0 |
80 |
10 |
6 |
6 |
11 |
5 |
0 |
0 |
HEM 1255 C HEM 1256 C
|
 |
14 |
 |
1.41 |
1.74 |
86.7 |
-0.94 |
-0.30 |
18.5 |
85 |
12 |
7 |
8 |
10 |
3 |
0 |
0 |
FAD 1656 D CIT 1657 D
|
 |
15 |
 |
1.32 |
2.67 |
110.4 |
-2.12 |
-0.58 |
27.4 |
85 |
11 |
15 |
9 |
6 |
0 |
2 |
0 |
|
 |
16 |
 |
1.29 |
2.66 |
147.2 |
-1.28 |
-0.18 |
23.3 |
81 |
16 |
13 |
9 |
18 |
5 |
2 |
0 |
HEM 1255 C HEM 1256 C
|
 |
17 |
 |
1.22 |
1.50 |
152.6 |
-1.28 |
-0.16 |
22.0 |
79 |
16 |
10 |
9 |
16 |
8 |
1 |
0 |
HEM 1255 C HEM 1256 C
|
 |
18 |
 |
2.39 |
2.46 |
39.6 |
-0.81 |
-0.08 |
10.6 |
77 |
0 |
2 |
3 |
2 |
5 |
1 |
0 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |