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PDBsum entry 2bs3

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 2bs3 calculated with MOLE 2.0 PDB id
2bs3
Pores calculated on whole structure Pores calculated excluding ligands

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8 pores, coloured by radius 18 pores, coloured by radius 18 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.77 1.77 28.7 -2.49 -0.47 27.8 77 3 3 2 2 2 1 0  
2 1.17 1.58 31.8 0.24 0.03 14.0 80 3 1 0 5 2 0 0  HEM 1256 F
3 1.56 1.56 32.0 1.82 0.79 6.9 77 2 0 1 9 3 0 0  HEM 1255 F HEM 1256 F
4 1.79 1.79 34.7 -1.82 -0.45 26.7 81 4 4 2 5 1 0 0  
5 1.24 2.51 44.5 -1.73 -0.28 26.6 85 9 8 4 7 2 1 0  
6 1.19 1.60 47.9 0.69 0.27 11.9 81 4 1 1 10 3 0 0  HEM 1255 F HEM 1256 F
7 1.19 1.50 53.9 -1.55 -0.26 23.7 83 7 5 4 5 2 2 0  
8 1.34 1.36 63.3 -2.07 -0.56 24.8 78 7 4 4 4 1 0 0  HEM 1255 F
9 1.32 1.33 68.9 -0.83 0.03 21.3 79 8 4 4 12 4 0 0  HEM 1255 F HEM 1256 F
10 1.35 1.76 72.3 -0.94 -0.32 17.9 86 9 6 7 8 4 0 0  FAD 1656 A CIT 1657 A
11 1.52 1.61 75.6 -1.02 -0.24 19.6 84 10 6 8 9 5 0 0  FAD 1656 A CIT 1657 A
12 1.28 1.78 75.8 -0.96 -0.39 15.0 88 9 6 8 7 2 1 0  FAD 1656 D CIT 1657 D
13 1.36 1.37 79.2 -1.40 -0.19 23.0 80 10 6 6 11 5 0 0  HEM 1255 C HEM 1256 C
14 1.41 1.74 86.7 -0.94 -0.30 18.5 85 12 7 8 10 3 0 0  FAD 1656 D CIT 1657 D
15 1.32 2.67 110.4 -2.12 -0.58 27.4 85 11 15 9 6 0 2 0  
16 1.29 2.66 147.2 -1.28 -0.18 23.3 81 16 13 9 18 5 2 0  HEM 1255 C HEM 1256 C
17 1.22 1.50 152.6 -1.28 -0.16 22.0 79 16 10 9 16 8 1 0  HEM 1255 C HEM 1256 C
18 2.39 2.46 39.6 -0.81 -0.08 10.6 77 0 2 3 2 5 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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