 |
PDBsum entry 2bmc
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 2bmc calculated with  MOLE 2.0
|
PDB id
|
|
|
|
2bmc
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
5 pores,
coloured by radius |
|
8 pores,
coloured by radius
|
8 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
3.10 |
3.10 |
32.2 |
-2.22 |
-0.55 |
24.9 |
84 |
|
5 |
2 |
3 |
2 |
1 |
0 |
0 |
|
MPY 1394 C
|
 |
|
2 |
 |
2.38 |
2.65 |
36.0 |
-0.80 |
-0.14 |
17.5 |
77 |
6 |
0 |
1 |
3 |
2 |
0 |
0 |
MPY 1395 D
|
|
3 |
 |
1.23 |
1.23 |
38.8 |
-1.61 |
-0.39 |
21.0 |
84 |
4 |
3 |
4 |
2 |
2 |
1 |
0 |
|
|
4 |
 |
3.44 |
3.58 |
41.7 |
-2.55 |
-0.51 |
26.3 |
81 |
8 |
2 |
3 |
2 |
2 |
0 |
0 |
MPY 1395 B
|
|
5 |
 |
1.25 |
2.92 |
44.0 |
-1.23 |
-0.28 |
17.2 |
75 |
1 |
4 |
1 |
3 |
2 |
1 |
0 |
MPY 1395 B
|
|
6 |
 |
1.83 |
1.99 |
45.4 |
-2.26 |
-0.71 |
26.8 |
85 |
4 |
6 |
2 |
2 |
0 |
1 |
0 |
|
|
7 |
 |
2.52 |
2.90 |
46.3 |
-1.62 |
-0.33 |
20.3 |
79 |
8 |
1 |
3 |
5 |
2 |
0 |
0 |
MPY 1395 B
|
 |
8 |
 |
1.10 |
1.40 |
78.6 |
-2.31 |
-0.52 |
29.8 |
87 |
12 |
7 |
6 |
2 |
1 |
1 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program