PDBsum entry 2bl9 Go to PDB code:  Tunnel analysis for: 2bl9 calculated with MOLE 2.0 PDB id 2bl9 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.25 2.15 28.6 0.34 0.36 6.9 79 1 1 1 5 4 1 0  NDP 1239 A CP6 1240 A 2 1.25 2.12 30.4 0.60 -0.01 4.1 79 0 1 2 5 4 0 0  NDP 1239 A CP6 1240 A 3 1.27 2.27 32.1 0.70 0.39 5.2 73 1 1 0 5 4 1 1  NDP 1239 A CP6 1240 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.