PDBsum entry 2bdm Go to PDB code:  Pore analysis for: 2bdm calculated with MOLE 2.0 PDB id 2bdm Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.02 4.94 26.8 1.68 0.36 5.4 73 1 1 1 5 3 0 0   2 1.78 2.07 42.7 0.85 0.40 8.4 74 3 2 1 7 3 0 0  CM5 505 A 3 1.22 1.22 59.9 0.83 0.28 1.8 72 1 0 2 8 5 4 1  HEM 500 A TMI 501 A CM5 504 A 4 1.22 1.21 84.6 0.10 0.03 6.4 75 2 3 4 11 3 5 1  HEM 500 A TMI 501 A CM5 504 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.