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PDBsum entry 2bcz

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Tunnel analysis for: 2bcz calculated with MOLE 2.0 PDB id
2bcz
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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5 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.94 12.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  6 G A,23 A C,24 A C,25 C C,35 G D,36 G D
2 1.99 13.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  6 G A,22 A C,23 A C,24 A C,36 G D,38 A D,39 C D,
40 A D
3 1.97 22.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  6 G A,23 A C,24 A C,25 C C,32 C D,33 G D,34 U D,
35 G D,36 G D
4 1.97 28.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  6 G A,23 A C,24 A C,25 C C,26 A C,27 C C,31 U D,
32 C D,33 G D,34 U D,35 G D,36 G D
5 2.96 12.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  4 C A,17 C C,18 A C,19 G C,20 A C,42 U D,43 A D,
44 C D,45 C D
6 2.85 12.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  15 G C,16 G C,17 C C,18 A C,19 G C,20 A C,43 A D,
44 C D,45 C D,46 U D
7 2.83 15.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  2 C A,13 G B,15 G C,16 G C,17 C C,18 A C,19 G C,
20 A C,43 A D,44 C D,45 C D,46 U D
8 2.18 5.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  7 U A,8 C A,8 I B,9 A B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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