PDBsum entry 2b9p Go to PDB code:  Tunnel analysis for: 2b9p calculated with MOLE 2.0 PDB id 2b9p Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.19 1.19 131.5 -0.65 -0.58 8.1 81 4 1 2 4 1 0 0  A 196 A C 531 A A 532 A G 563 A C 564 A C 565 A U 566 A A 567 A G 666 A C 671 A A 804 A G 805 A C 806 A G 809 A U 810 A U 811 A U 813 A G 832 A U 833 A U 943 A U 1188 A A 1189 A G 1190 A A 1253 A G 2018 A G 2035 A U 2079 A G 2235 A C 2236 A A 2392 A A 2393 A G 2421 A A 2422 A C 2424 A G 2429 A A 2430 A U 2431 A A 2432 A A 2433 A 2 1.18 1.18 132.8 -0.74 -0.61 8.2 78 6 0 2 3 1 0 0  A 196 A C 531 A A 532 A G 563 A C 564 A C 565 A U 566 A A 567 A G 666 A C 671 A A 804 A G 805 A C 806 A G 809 A U 810 A U 811 A U 813 A G 832 A U 833 A U 943 A U 1188 A A 1189 A G 1190 A A 1253 A G 2018 A G 2035 A G 2246 A G 2255 A G 2256 A U 2257 A A 2392 A C 2424 A A 2426 A G 2429 A A 2430 A U 2431 A A 2433 A A 2434 A A 2435 A G 2436 A 3 1.18 1.18 146.2 -1.34 -0.66 10.9 81 5 3 6 1 2 0 0  G 1 A G 2 A U 3 A C 4 A A 5 A A 6 A G 7 A A 8 A U 9 A G 10 A C 527 A C 531 A A 532 A A 536 A C 537 A G 539 A G 556 A G 558 A G 559 A C 560 A G 561 A U 562 A G 563 A C 564 A C 976 A G 977 A A 1155 A A 1156 A G 2018 A G 2035 A C 2628 A A 2629 A G 2630 A U 2779 A G 2780 A A 2781 A A 2790 A G 2894 A U 2895 A C 2896 A 4 1.14 1.14 263.1 -0.86 -0.66 8.3 78 9 3 6 2 4 0 0  U 9 A G 10 A G 11 A U 12 A A 13 A A 14 A G 521 A G 522 A C 523 A C 531 A A 532 A A 536 A C 537 A G 539 A G 540 A C 541 A C 542 A G 556 A G 558 A G 559 A C 560 A G 561 A U 562 A G 563 A C 564 A C 976 A G 977 A A 1155 A A 1156 A G 1651 A A 1652 A G 1653 A C 2007 A C 2008 A G 2018 A G 2035 A G 2624 A G 2625 A C 2626 A C 2690 A C 2691 A C 2692 A A 2693 A G 2694 A C 2695 A U 2696 A G 2706 A G 2707 A G 2708 A G 2709 A U 2797 A C 2798 A A 2799 A A 2801 A G 2802 A C 2803 A C 2804 A C 2814 A C 2815 A C 2816 A G 2817 A G 2818 A G 2819 A C 2825 A A 2826 A G 2838 A G 2839 A U 2849 A A 2850 A A 2851 A G 2862 A C 2863 A G 2864 A U 2865 A G 2867 A G 2872 A A 2873 A C 2888 A C 2889 A G 2891 A 5 1.16 1.15 275.6 -0.19 -0.44 7.7 86 8 1 3 16 0 0 1  C 462 A C 531 A A 532 A G 563 A C 564 A C 565 A U 566 A A 567 A A 670 A C 671 A C 672 A C 673 A G 674 A A 675 A A 676 A A 677 A A 735 A C 736 A G 738 A G 739 A U 740 A G 741 A G 742 A G 743 A G 745 A A 746 A G 748 A A 751 A A 752 A C 753 A C 754 A C 755 A C 756 A U 757 A A 789 A C 790 A C 795 A C 796 A A 802 A U 803 A A 804 A G 805 A C 806 A G 809 A U 810 A U 811 A U 813 A G 832 A U 943 A U 1188 A A 1189 A G 1190 A A 1253 A A 1272 A A 1274 A G 1299 A A 1301 A A 1302 A G 1620 A C 1636 A A 1637 A C 1660 A G 1661 A C 1662 A A 1665 A G 1666 A G 1667 A G 1678 A U 1679 A U 1680 A G 1681 A A 1755 A A 1759 A A 1760 A C 1761 A A 1762 A C 1782 A A 1783 A C 1990 A U 1991 A G 2018 A G 2035 A A 2058 A U 2609 A U 2611 A U 2712 A U 2716 A G 2717 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.