 |
PDBsum entry 2b4c
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 2b4c calculated with MOLE 2.0
|
PDB id
|
|
|
|
2b4c
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Tunnels calculated on whole structure |
 |
Tunnels calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
6 tunnels,
coloured by tunnel radius |
 |
5 tunnels,
coloured by
tunnel radius
|
5 tunnels,
coloured as in list below
|
|
|
 |
 |
 |
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.19 |
1.45 |
28.6 |
-1.17 |
-0.26 |
15.2 |
82 |
 |
4 |
2 |
4 |
2 |
2 |
0 |
0 |
 |
|
 |
 |
2 |
 |
1.20 |
1.44 |
30.9 |
-0.44 |
-0.33 |
11.4 |
82 |
3 |
1 |
2 |
3 |
1 |
0 |
0 |
|
 |
3 |
 |
1.20 |
1.46 |
36.3 |
-0.49 |
-0.17 |
9.7 |
84 |
4 |
3 |
3 |
4 |
2 |
0 |
0 |
|
 |
4 |
 |
1.14 |
1.44 |
41.7 |
0.28 |
0.17 |
8.8 |
80 |
2 |
2 |
2 |
8 |
2 |
1 |
0 |
|
 |
5 |
 |
1.18 |
1.45 |
24.7 |
0.60 |
0.49 |
14.1 |
75 |
2 |
1 |
0 |
3 |
3 |
0 |
0 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |