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PDBsum entry 2b2s

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Pore analysis for: 2b2s calculated with MOLE 2.0 PDB id
2b2s
Pores calculated on whole structure Pores calculated excluding ligands

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14 pores, coloured by radius 16 pores, coloured by radius 16 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.10 3.17 26.6 -1.25 0.18 25.1 74 3 3 0 2 2 0 0  
2 1.10 1.22 26.8 -0.23 0.19 6.4 66 3 0 1 5 3 1 0  
3 1.41 1.72 29.5 -0.95 -0.12 15.0 84 3 5 3 2 1 1 0  
4 2.54 2.74 42.7 -1.62 -0.49 14.8 91 3 2 5 4 1 0 0  
5 1.29 1.35 60.4 -1.47 -0.36 16.8 75 5 2 3 6 3 2 0  
6 1.38 2.12 65.2 -1.05 -0.19 14.4 85 6 6 4 8 2 1 0  
7 1.47 1.84 66.7 -0.74 -0.09 15.6 83 6 5 2 9 3 1 0  
8 1.49 1.78 68.6 -1.63 -0.40 21.6 88 7 5 7 4 3 1 0  
9 2.00 2.18 69.3 -0.75 -0.16 13.5 82 4 6 3 9 2 2 0  
10 1.47 1.82 73.3 -1.07 -0.30 16.3 83 7 5 3 5 2 1 0  
11 2.47 3.76 77.1 -1.19 -0.21 20.1 86 6 8 6 10 3 2 0  
12 1.45 1.66 83.8 -1.70 -0.48 22.6 86 8 9 6 5 2 1 0  
13 1.20 1.32 114.6 -1.34 -0.28 15.3 77 7 4 4 9 3 4 0  
14 1.24 1.42 126.2 -1.26 -0.32 18.4 82 9 8 7 12 5 2 0  
15 1.19 1.28 156.3 -0.76 -0.12 14.2 81 8 9 5 20 5 3 0  HEM 1500 A
16 1.21 1.40 200.0 -1.80 -0.43 20.6 82 17 10 9 14 3 7 0  HEM 1500 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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