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PDBsum entry 2b1b

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Top Page dna_rna metals tunnels links
Tunnel analysis for: 2b1b calculated with MOLE 2.0 PDB id
2b1b
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 3.18 8.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  1 DG A,2 DC A,3 DG A,4 DT A,5 DG A,14 DC B,15 DC
B,16 DC B,17 DA B,18 DC B
2 2.39 9.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  4 DT A,5 DG A,6 DG A,7 DG A,8 DC A,11 DG B,14 DC
B,15 DC B,16 DC B
3 3.02 9.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  1 DG A,2 DC A,3 DG A,4 DT A,5 DG A,14 DC B,15 DC
B,16 DC B,17 DA B
4 2.35 14.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  4 DT A,5 DG A,6 DG A,7 DG A,11 DG B,12 DT B,13 DG
B,14 DC B,15 DC B,16 DC B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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