 |
PDBsum entry 2b0e
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 2b0e calculated with  MOLE 2.0
|
PDB id
|
|
|
|
2b0e
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
3 pores,
coloured by radius |
|
4 pores,
coloured by radius
|
4 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.65 |
1.65 |
25.1 |
-1.16 |
-0.55 |
14.6 |
83 |
|
3 |
0 |
0 |
1 |
1 |
0 |
0 |
|
DG 4 C DT 10 C DT 11 C DA 1 D DA 2 D DA 3 D DG 4 D
|
 |
|
2 |
 |
1.64 |
1.91 |
35.3 |
-1.88 |
-0.62 |
22.1 |
81 |
4 |
5 |
2 |
1 |
2 |
1 |
0 |
DT 11 C DU 7 D DT 8 D DC 9 D DT 10 D
|
|
3 |
 |
1.23 |
2.49 |
36.5 |
-0.68 |
-0.01 |
17.5 |
68 |
3 |
4 |
0 |
1 |
4 |
1 |
0 |
DT 11 C DA 6 D DU 7 D
|
 |
4 |
 |
1.22 |
2.45 |
55.7 |
-1.21 |
-0.38 |
17.5 |
68 |
5 |
5 |
1 |
1 |
6 |
1 |
0 |
DA 6 C DU 7 C DA 6 D DU 7 D DT 10 D
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program