PDBsum entry 2b0d Go to PDB code:  Tunnel analysis for: 2b0d calculated with MOLE 2.0 PDB id 2b0d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.35 1.53 26.5 -1.74 -0.76 24.2 88 1 4 2 1 1 1 0  CA 246 A DT 7 C 2 1.39 1.39 27.3 -2.43 -0.79 30.1 82 2 4 1 0 0 1 0  DT 7 C DA 6 D DT 7 D 3 1.39 1.39 29.0 -1.85 -0.82 22.6 86 1 3 1 0 0 1 0  CA 246 A DA 6 C DT 7 C DA 6 D DT 7 D 4 1.39 1.39 31.5 -1.65 -0.78 19.4 82 3 2 1 0 0 1 0  CA 246 A DA 6 C DT 7 C DA 6 D DT 7 D 5 1.24 1.42 36.8 -2.06 -0.68 27.4 88 3 5 3 2 1 1 0  DT 7 C DT 7 D 6 1.19 1.19 43.4 -0.12 0.08 14.2 72 3 3 0 3 4 0 0  DT 7 C DA 6 D DT 7 D 7 1.19 1.42 54.7 -0.46 -0.11 15.1 79 4 4 1 4 5 0 0  DT 7 C DA 6 D DT 7 D 8 1.16 1.18 63.6 -1.63 -0.49 21.1 80 5 6 2 1 2 2 0  CA 246 A DT 7 C DA 6 D DT 7 D 9 1.26 1.80 19.9 0.10 0.34 6.3 71 0 1 1 3 4 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.