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PDBsum entry 2awb
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Top Page protein dna_rna metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 2awb calculated with MOLE 2.0 PDB id
2awb
Tunnels calculated on whole structure Tunnels calculated excluding ligands
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18 tunnels, coloured by tunnel radius 26 tunnels, coloured by tunnel radius 26 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.33 1.33 80.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  C 565 B U 566 B U 567 B U 568 B U 569 B G 570 B U
571 B A 575 B U 576 B G 577 B G 808 B G 809 B G
830 B A 945 B C 946 B A 947 B C 964 B A 1253 B A
2030 B C 2066 B G 2067 B G 2246 B A 2247 B C 2248
B U 2249 B G 2252 B G 2253 B C 2254 B G 2255 B G
2436 B G 2446 B G 2447 B A 2448 B U 2449 B C 2498
B G 2502 B MG 3014 B
2 1.24 1.50 79.8 -1.05 -0.41 10.1 76 4 0 2 2 2 0 0  C 461 B A 470 B A 471 B A 508 B C 565 B G 577 B C
673 B G 808 B G 809 B A 1253 B A 1254 B U 1255 B
G 1256 B C 1257 B U 1258 B G 1259 B A 1321 B A
2060 B G 2502 B
3 1.35 1.35 84.3 -0.64 -0.79 5.0 95 1 1 1 0 0 0 0  C 565 B U 566 B U 567 B U 568 B U 569 B G 570 B U
571 B A 575 B U 576 B G 577 B G 808 B G 809 B C
823 B U 824 B A 825 B A 829 B G 830 B A 945 B C
946 B A 947 B C 964 B C 965 B A 1253 B A 2030 B U
2249 B G 2255 B G 2256 B U 2257 B C 2258 B U 2259
B A 2273 B A 2274 B C 2275 B G 2446 B G 2447 B A
2448 B U 2449 B C 2498 B G 2502 B MG 2908 B MG
3014 B
4 1.32 1.32 87.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  C 565 B U 566 B U 567 B U 568 B U 569 B G 570 B U
571 B A 575 B U 576 B G 577 B G 808 B G 809 B A
821 B G 822 B G 836 B C 837 B C 922 B G 923 B C
935 B A 945 B C 946 B A 947 B C 964 B C 965 B G
966 B U 967 B C 968 B A 1253 B A 2030 B A 2270 B
G 2355 B U 2356 B G 2357 B G 2446 B G 2447 B A
2448 B U 2449 B C 2498 B G 2502 B MG 2932 B MG
3014 B
5 1.36 1.36 89.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 84 A G 85 A G 86 A U 87 A C 88 A C 565 B U 566
B U 567 B U 568 B U 569 B G 570 B U 571 B A 575 B
U 576 B G 577 B G 808 B G 809 B A 945 B A 947 B C
948 B G 949 B G 950 B C 961 B A 979 B A 984 B C
985 B A 1001 B G 1002 B G 1003 B G 1025 B C 1145
B C 1146 B A 1147 B U 1148 B A 1253 B G 2029 B A
2030 B A 2031 B G 2446 B G 2447 B A 2448 B C 2498
B G 2502 B
6 1.33 1.33 94.9 -1.06 -0.78 11.3 87 3 1 2 1 0 0 0  U 441 B C 565 B U 566 B U 567 B U 568 B U 576 B G
577 B C 587 B U 588 B U 589 B U 591 B A 592 B U
593 B A 608 B A 609 B G 612 B A 614 B U 615 B C
660 B A 661 B G 662 B G 663 B U 665 B C 671 B U
807 B G 808 B G 809 B U 810 B A 1253 B G 2446 B G
2447 B G 2502 B MG 2914 B
7 1.33 1.33 95.5 -0.67 -0.76 7.0 84 2 0 0 1 0 0 0  C 565 B U 566 B U 567 B U 568 B U 576 B G 577 B C
587 B U 588 B U 589 B G 662 B G 663 B U 665 B C
671 B U 807 B G 808 B G 809 B U 810 B C 1196 B G
1197 B G 1227 B G 1228 B U 1242 B C 1243 B A 1244
B G 1245 B A 1246 B A 1247 B U 1249 B A 1253 B G
2446 B G 2447 B G 2502 B MG 2914 B
8 1.35 1.35 95.6 -0.79 -0.50 11.4 80 7 0 1 3 2 0 0  U 534 B G 551 B U 552 B G 553 B C 564 B C 565 B U
566 B U 567 B U 568 B U 576 B G 577 B U 807 B G
808 B G 809 B U 810 B U 1219 B G 1220 B G 1252 B
A 1253 B G 2446 B G 2447 B G 2502 B MG 2914 B MG
2948 B
9 1.36 1.36 103.1 -0.53 -0.78 4.9 65 1 0 0 0 0 1 0  C 565 B U 566 B U 567 B U 568 B U 569 B G 570 B U
571 B A 575 B U 576 B G 577 B G 808 B G 809 B C
817 B G 818 B A 819 B A 820 B A 821 B G 822 B C
837 B C 838 B U 839 B C 840 B G 841 B U 842 B U
931 B U 932 B A 933 B U 934 B A 945 B C 946 B A
947 B C 964 B C 965 B G 966 B U 967 B C 968 B G
969 B U 970 B C 1167 B G 1168 B A 1253 B A 2030 B
G 2446 B G 2447 B A 2448 B U 2449 B C 2498 B G
2502 B MG 2932 B MG 3014 B
10 1.39 1.39 112.2 -0.44 -0.80 3.9 83 1 0 0 0 0 0 0  C 88 A U 89 A C 565 B U 566 B U 567 B U 568 B U
569 B G 570 B U 571 B A 575 B U 576 B G 577 B G
808 B G 809 B A 945 B C 946 B A 947 B C 948 B G
949 B G 950 B C 951 B G 953 B U 958 B A 959 B A
960 B C 961 B U 963 B C 964 B C 965 B A 1253 B A
2030 B G 2446 B G 2447 B A 2448 B U 2449 B U 2457
B G 2458 B A 2459 B U 2460 B A 2461 B A 2482 B C
2483 B G 2485 B C 2486 B G 2487 B C 2498 B G 2502
B MG 3014 B
11 1.36 1.36 111.3 -0.34 -0.73 3.6 80 2 0 0 1 0 1 0  G 185 B G 186 B U 193 B G 194 B A 203 B A 204 B G
205 B A 219 B G 220 B U 235 B C 236 B C 237 B G
254 B A 255 B A 382 B C 383 B C 393 B C 394 B U
395 B C 565 B U 566 B U 567 B U 568 B U 576 B G
577 B U 667 B A 668 B G 669 B A 670 B C 672 B C
673 B G 674 B U 803 B A 804 B G 805 B C 806 B U
807 B G 808 B G 809 B U 810 B A 1253 B G 2446 B G
2447 B G 2502 B MG 2914 B
12 1.46 1.46 122.4 -0.60 -0.72 7.7 80 5 1 0 3 0 0 0  C 565 B U 566 B U 567 B U 568 B U 569 B G 570 B U
571 B A 575 B U 576 B G 577 B G 808 B G 809 B C
823 B U 824 B A 825 B A 829 B G 830 B A 945 B C
946 B A 947 B C 964 B C 965 B A 1253 B A 2030 B U
2249 B C 2260 B C 2261 B A 2273 B A 2274 B C 2283
B A 2284 B G 2360 B G 2361 B C 2362 B G 2363 B G
2389 B U 2390 B G 2391 B G 2421 B C 2422 B U 2423
B G 2446 B G 2447 B A 2448 B U 2449 B C 2498 B G
2502 B MG 2908 B MG 3014 B
13 1.41 1.41 121.8 -0.69 -0.77 7.0 77 4 0 0 0 0 0 0  U 87 A C 88 A C 565 B U 566 B U 567 B U 568 B U
569 B G 570 B U 571 B A 575 B U 576 B G 577 B G
808 B G 809 B A 945 B A 947 B C 948 B G 949 B C
961 B A 979 B C 982 B A 984 B G 1024 B G 1025 B G
1026 B A 1027 B A 1028 B A 1029 B G 1031 B A 1032
B G 1116 B C 1117 B U 1119 B G 1120 B C 1121 B G
1122 B C 1123 B A 1134 B A 1253 B G 2029 B A 2030
B A 2031 B G 2446 B G 2447 B A 2448 B C 2498 B G
2502 B
14 1.44 1.44 125.4 -0.43 -0.77 3.9 95 1 1 2 2 0 0 0  C 565 B U 566 B U 567 B U 568 B U 569 B G 570 B U
571 B A 575 B U 576 B G 577 B G 808 B G 809 B C
823 B U 824 B A 825 B A 829 B G 830 B G 859 B C
867 B U 868 B G 869 B U 913 B G 914 B A 945 B C
946 B A 947 B C 964 B C 965 B A 1253 B A 2030 B U
2249 B U 2259 B C 2263 B C 2264 B U 2265 B A 2266
B A 2270 B G 2271 B U 2272 B A 2273 B A 2274 B U
2321 B A 2322 B A 2328 B U 2329 B G 2330 B G 2331
B G 2446 B G 2447 B A 2448 B U 2449 B C 2498 B G
2502 B MG 2908 B MG 3014 B
15 1.45 1.45 128.2 -0.57 -0.75 6.3 80 0 3 1 0 2 0 0  C 88 A C 565 B U 566 B U 567 B U 568 B U 569 B G
570 B U 571 B A 575 B U 576 B G 577 B G 808 B G
809 B A 945 B A 947 B C 948 B G 949 B C 961 B A
984 B G 1022 B U 1023 B G 1026 B A 1127 B G 1128
B A 1129 B A 1133 B A 1134 B A 1253 B G 2027 B U
2028 B G 2029 B A 2030 B A 2031 B G 2446 B G 2447
B A 2448 B C 2456 B U 2457 B G 2490 B C 2498 B G
2502 B A 2541 B A 2738 B U 2739 B A 2740 B A 2741
B U 2756 B A 2757 B A 2758 B G 2759 B C 2760 B
16 1.45 1.45 132.2 -0.53 -0.66 6.7 89 5 0 1 2 0 0 0  C 88 A C 565 B U 566 B U 567 B U 568 B U 569 B G
570 B U 571 B A 575 B U 576 B G 577 B G 808 B G
809 B A 945 B A 947 B C 948 B G 949 B C 961 B A
979 B A 980 B A 981 B C 982 B A 984 B U 1132 B A
1133 B A 1134 B G 1136 B G 1137 B G 1138 B A 1253
B G 2027 B U 2028 B G 2029 B A 2030 B A 2031 B U
2039 B G 2040 B U 2041 B A 2042 B G 2446 B G 2447
B A 2448 B C 2498 B G 2502 B U 2637 B A 2639 B A
2778 B U 2779 B G 2780 B G 2782 B
17 1.46 1.46 131.6 -0.60 -0.75 7.1 82 3 1 0 2 0 0 0  C 565 B U 566 B U 567 B U 568 B U 569 B G 570 B U
571 B A 575 B U 576 B G 577 B G 808 B G 809 B C
823 B U 824 B A 825 B A 829 B G 830 B A 945 B C
946 B A 947 B C 964 B C 965 B A 1253 B A 2030 B U
2249 B C 2260 B C 2261 B A 2273 B A 2274 B G 2345
B G 2351 B G 2360 B G 2361 B C 2362 B G 2363 B C
2364 B G 2365 B A 2366 B G 2367 B C 2368 B A 2369
B U 2372 B G 2379 B C 2380 B A 2381 B G 2382 B G
2383 B G 2389 B U 2390 B G 2391 B G 2446 B G 2447
B A 2448 B U 2449 B C 2498 B G 2502 B MG 2908 B
MG 3014 B
18 1.43 1.43 146.7 -0.30 -0.63 3.7 72 1 1 0 3 3 0 0  C 88 A C 565 B U 566 B U 567 B U 568 B U 569 B G
570 B U 571 B A 575 B U 576 B G 577 B G 808 B G
809 B A 945 B A 947 B C 948 B G 949 B C 961 B A
984 B G 1026 B A 1127 B G 1128 B A 1129 B A 1133
B A 1134 B A 1253 B G 2027 B U 2028 B G 2029 B A
2030 B A 2031 B G 2446 B G 2447 B A 2448 B C 2456
B U 2457 B G 2490 B C 2498 B G 2502 B A 2516 B C
2517 B A 2541 B A 2542 B G 2543 B U 2637 B G 2638
B A 2639 B G 2640 B G 2641 B G 2642 B G 2643 B G
2644 B C 2767 B U 2768 B U 2769 B G 2770 B C 2771
B C 2772 B C 2773 B C 2774 B G 2775 B
19 1.44 1.44 146.0 -0.78 -0.74 8.6 85 5 0 1 1 0 0 0  C 565 B U 566 B U 567 B U 568 B U 576 B G 577 B A
670 B C 672 B C 673 B G 674 B A 675 B A 676 B A
677 B C 678 B C 679 B C 680 B G 681 B G 682 B G
775 B G 776 B G 777 B A 794 B C 795 B C 796 B G
798 B A 800 B G 801 B A 802 B U 803 B A 804 B G
805 B C 806 B U 807 B G 808 B G 809 B U 810 B A
1253 B A 1808 B A 2082 B G 2083 B U 2085 B U 2086
B G 2087 B A 2088 B G 2193 B C 2226 B A 2227 B G
2228 B U 2229 B G 2230 B C 2232 B U 2233 B G 2446
B G 2447 B G 2502 B MG 2914 B MG 2933 B
20 1.27 1.50 147.1 -0.87 -0.56 10.2 82 8 2 2 5 2 0 0  A 127 B C 128 B C 129 B C 130 B A 131 B G 132 B A
142 B C 143 B A 144 B A 460 B C 461 B A 470 B C
565 B G 577 B C 673 B G 808 B G 809 B A 1253 B A
1254 B U 1255 B G 1256 B C 1257 B U 1258 B G 1259
B G 1311 B U 1312 B A 1322 B C 1323 B G 1334 B G
1407 B G 1408 B A 1596 B A 1598 B U 1599 B C 1600
B G 1601 B A 2060 B G 2502 B
21 1.43 1.43 152.0 -0.70 -0.71 7.7 84 5 0 1 2 1 0 0  C 565 B U 566 B U 567 B U 568 B U 576 B G 577 B A
670 B C 672 B C 673 B G 674 B A 675 B A 676 B A
677 B C 678 B C 679 B C 680 B G 681 B G 682 B G
775 B G 776 B G 777 B A 794 B C 795 B C 796 B G
798 B A 800 B G 801 B A 802 B U 803 B A 804 B G
805 B C 806 B U 807 B G 808 B G 809 B U 810 B A
1253 B A 1805 B C 1806 B G 1807 B A 1808 B C 1844
B G 1845 B G 1846 B A 1847 B G 1891 B A 2082 B G
2083 B C 2084 B U 2085 B U 2086 B G 2235 B U 2236
B G 2239 B G 2446 B G 2447 B G 2502 B MG 2914 B
MG 2933 B
22 1.44 1.44 152.1 -0.42 -0.68 6.5 84 4 1 0 2 0 0 0  G 36 B C 37 B A 38 B G 48 B U 50 B A 53 B G 54 B
G 68 B C 69 B G 108 B C 109 B G 110 B A 111 B U
112 B U 113 B A 182 B C 183 B U 193 B G 194 B A
203 B A 204 B A 207 B U 434 B C 435 B C 436 B U
437 B U 451 B A 453 B G 458 B C 565 B U 566 B U
567 B U 568 B U 576 B G 577 B A 668 B G 669 B A
670 B C 672 B C 673 B G 674 B A 800 B U 803 B A
804 B G 805 B C 806 B U 807 B G 808 B G 809 B U
810 B A 1253 B G 2446 B G 2447 B G 2502 B MG 2914
B
23 1.23 1.51 155.7 -0.78 -0.57 8.6 79 7 0 2 4 2 0 0  A 125 B A 127 B A 460 B C 461 B A 470 B C 565 B G
577 B C 673 B G 808 B G 809 B A 1253 B A 1254 B U
1255 B G 1256 B C 1257 B U 1258 B G 1259 B C 1306
B A 1307 B A 1308 B G 1311 B U 1312 B A 1322 B C
1323 B G 1334 B G 1346 B A 1347 B U 1379 B G 1380
B G 1381 B G 1382 B A 1384 B A 1385 B C 1386 B U
1405 B G 1471 B C 1472 B U 1513 B G 1514 B A 1515
B C 1556 B C 1557 B C 1600 B G 1601 B G 1623 B U
1624 B A 2060 B G 2502 B
24 1.42 1.42 174.0 -0.77 -0.75 8.4 85 5 0 1 1 0 0 0  C 565 B U 566 B U 567 B U 568 B U 576 B G 577 B A
670 B C 672 B C 673 B G 674 B A 675 B A 676 B A
677 B A 735 B A 739 B G 745 B U 746 B A 752 B A
753 B U 754 B U 755 B A 756 B G 757 B C 758 B U
790 B C 791 B C 795 B C 796 B A 800 B G 801 B A
802 B U 803 B A 804 B G 805 B C 806 B U 807 B G
808 B G 809 B U 810 B A 1253 B A 1274 B C 1298 B
G 1299 B A 1302 B U 1636 B A 1637 B A 1678 B A
1679 B U 1680 B G 1681 B C 1761 B A 1762 B U 1782
B A 2059 B A 2062 B C 2442 B G 2446 B G 2447 B G
2502 B U 2609 B C 2712 B C 2716 B C 2717 B MG
2914 B MG 2933 B MG 2947 B MG 2970 B
25 1.44 1.44 207.0 -0.51 -0.69 5.0 84 3 0 1 2 1 0 0  C 88 A C 565 B U 566 B U 567 B U 568 B U 569 B G
570 B U 571 B A 575 B U 576 B G 577 B G 808 B G
809 B A 945 B A 947 B C 948 B G 949 B C 961 B A
984 B G 1026 B A 1127 B G 1128 B A 1129 B A 1133
B A 1134 B A 1253 B G 2027 B U 2028 B G 2029 B A
2030 B A 2031 B C 2043 B G 2446 B G 2447 B A 2448
B C 2456 B U 2457 B G 2490 B C 2498 B G 2502 B U
2514 B C 2515 B A 2516 B C 2517 B A 2541 B A 2542
B G 2543 B G 2544 B G 2621 B U 2622 B G 2623 B G
2624 B G 2627 B G 2633 B A 2634 B G 2641 B G 2642
B G 2643 B G 2644 B G 2645 B C 2767 B C 2774 B G
2775 B G 2777 B A 2778 B G 2812 B A 2813 B C 2827
B G 2828 B A 2829 B C 2830 B G 2831 B U 2832 B U
2833 B G 2885 B A 2886 B
26 1.28 1.28 15.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  A 226 B A 227 B C 228 B C 229 B G 230 B A 231 B C
418 B U 419 B MG 2965 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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