spacer
spacer

PDBsum entry 2alg

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 2alg calculated with MOLE 2.0 PDB id
2alg
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
2 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.11 1.66 26.8 0.72 0.27 7.3 91 1 0 5 8 1 1 0  DAO 202 A HP6 204 A
2 1.44 1.93 27.2 0.56 0.19 6.3 80 3 0 2 5 1 2 1  DAO 202 A
3 1.45 1.93 32.2 2.52 0.81 3.1 85 1 0 3 13 1 1 1  DAO 202 A HP6 204 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer