PDBsum entry 2aky Go to PDB code:  Tunnel analysis for: 2aky calculated with MOLE 2.0 PDB id 2aky Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.23 1.45 42.1 -1.40 -0.32 20.9 83 7 2 1 3 1 2 0  AP5 301 A MG 401 A 2 1.25 1.51 43.5 -0.35 -0.11 13.0 86 3 2 2 9 1 0 0  AP5 301 A 3 1.24 1.45 45.4 -1.23 -0.19 22.8 87 6 2 1 6 1 2 0  AP5 301 A MG 401 A 4 1.24 1.44 48.5 -1.14 -0.27 18.3 83 7 0 2 4 2 2 0  AP5 301 A MG 401 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.