PDBsum entry 2agc

Tunnel analysis for: 2agc calculated with

MOLE 2.0

PDB id

2agc

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

0 tunnels, coloured by tunnel radius

5 tunnels, coloured by tunnel radius

5 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.21

1.34

31.4

1.70

0.58

2.8

78

0

1

3

11

3

1

0

DAO 2055 A DAO 2057 A MYR 3045 A

2

1.20

1.34

35.1

1.43

0.30

5.7

81

0

2

2

9

1

0

2

DAO 2057 A MYR 3045 A

3

1.20

1.34

36.3

1.60

0.62

2.9

83

0

1

2

10

2

2

0

DAO 2055 A DAO 2057 A MYR 3045 A

4

1.21

1.34

37.6

2.16

0.60

3.2

79

0

2

2

15

1

2

0

DAO 2055 A DAO 2057 A MYR 3045 A

5

1.19

1.34

38.2

2.17

0.63

2.4

86

0

1

2

13

1

2

0

DAO 2055 A DAO 2057 A MYR 3045 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.