PDBsum entry 2afy Go to PDB code:  Tunnel analysis for: 2afy calculated with MOLE 2.0 PDB id 2afy Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.62 1.71 19.9 -1.19 -0.10 7.5 81 2 0 6 3 4 0 0  OCS 336 X 2 1.55 1.68 20.2 -0.95 0.12 6.0 76 1 0 4 4 5 0 0  OCS 336 X 3 1.23 1.23 18.8 -1.01 -0.37 14.6 86 3 0 1 2 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.