PDBsum entry 2aem Go to PDB code:  Tunnel analysis for: 2aem calculated with MOLE 2.0 PDB id 2aem Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.37 1.59 24.1 0.03 -0.20 8.0 90 0 3 3 4 0 1 1   2 1.39 1.77 26.4 0.43 0.15 17.0 86 2 4 1 5 0 0 1   3 1.37 1.59 27.2 -0.39 -0.31 18.4 89 0 4 1 3 0 0 1   4 1.38 1.64 36.6 0.88 0.37 10.2 85 2 4 3 8 1 0 1   5 1.38 1.60 44.2 0.15 -0.04 16.3 84 0 6 2 9 0 0 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.