PDBsum entry 2a9g

Tunnel analysis for: 2a9g calculated with

MOLE 2.0

PDB id

2a9g

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.34

3.13

24.3

1.28

0.69

5.8

74

0

2

1

5

3

1

0

2

1.34

3.15

25.3

0.30

0.26

8.8

80

0

2

3

5

3

1

0

3

1.26

2.64

26.0

1.22

0.71

9.4

76

1

1

1

6

3

0

0

4

1.39

1.39

21.6

-1.13

-0.20

17.7

72

1

2

1

3

2

1

0

5

1.42

1.42

23.4

-0.25

0.14

9.8

77

1

1

1

5

2

0

0

6

1.67

1.80

19.1

0.27

0.14

10.2

84

1

1

1

4

1

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.