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PDBsum entry 2a73

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Immune system PDB id
2a73
Contents
Protein chains
635 a.a.
976 a.a.
Ligands
NAG-NAG
NAG-NAG-MAN-MAN-
BMA

References listed in PDB file
Key reference
Title Structures of complement component c3 provide insights into the function and evolution of immunity.
Authors B.J.Janssen, E.G.Huizinga, H.C.Raaijmakers, A.Roos, M.R.Daha, K.Nilsson-Ekdahl, B.Nilsson, P.Gros.
Ref. Nature, 2005, 437, 505-511. [DOI no: 10.1038/nature04005]
PubMed id 16177781
Abstract
The mammalian complement system is a phylogenetically ancient cascade system that has a major role in innate and adaptive immunity. Activation of component C3 (1,641 residues) is central to the three complement pathways and results in inflammation and elimination of self and non-self targets. Here we present crystal structures of native C3 and its final major proteolytic fragment C3c. The structures reveal thirteen domains, nine of which were unpredicted, and suggest that the proteins of the alpha2-macroglobulin family evolved from a core of eight homologous domains. A double mechanism prevents hydrolysis of the thioester group, essential for covalent attachment of activated C3 to target surfaces. Marked conformational changes in the alpha-chain, including movement of a critical interaction site through a ring formed by the domains of the beta-chain, indicate an unprecedented, conformation-dependent mechanism of activation, regulation and biological function of C3.
Figure 1.
Figure 1: Structures of human complement components C3 and C3c. a, b, Ribbon representation of native C3 (13 domains) and C3c (10 domains), respectively. Also shown are intact thioester (red spheres), anchor region (grey) and 'NT (black). c, Domain sequence and arrangements in C3 and C3c. The colour scheme matches that in a, b. Shown are the thioester site (white triangle), disulphide bridges, glycan positions (for details see Supplementary Figs 3 and 6) and cleavage sites. Sequential proteolysis from C3 to C3c is indicated. d, e, Intertwined domains. d, MG6 intertwines the - and -chain of mature C3. MG6^ , green; MG6^ , pink. e, Intertwined CUB. CUB^g, cyan; CUB^f, red. Fibronectin-type 3 and CUB strand numbering are indicated.
Figure 5.
Figure 5: The alpha-'NT region (residues 727-744) slips through the beta--ring. a, Two views, rotated by 180°, of the cone formed by ANA, MG3 and MG8 (surface representation), and residues 730-744 (stick representation). Residues important for factor B binding are labelled. b, The 'NT regions are on opposite sides of the molecule in C3 and C3c. In C3 this region is covalently linked to ANA; the scissile bond 726-727 is part of a disordered loop 720-729 (dashed line). Also shown are surface contours of C3 and C3c (transparent light grey), residues 727-767 (green sticks), ANA and MG6 (ribbons), and MG2 and MG3 of the -ring (spheres).
The above figures are reprinted by permission from Macmillan Publishers Ltd: Nature (2005, 437, 505-511) copyright 2005.
PROCHECK
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