spacer
spacer

PDBsum entry 2a4z

Go to PDB code: 
Top Page protein ligands pores links
Pore analysis for: 2a4z calculated with MOLE 2.0 PDB id
2a4z
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
9 pores, coloured by radius 9 pores, coloured by radius 9 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.60 2.14 35.0 -1.40 -0.63 10.4 87 5 0 4 1 0 2 0  
2 1.11 1.07 38.4 -0.68 -0.25 12.3 82 5 1 4 5 1 0 0  
3 2.71 4.32 47.9 -2.41 -0.54 30.2 85 7 5 4 2 0 1 0  
4 1.63 2.16 58.5 -0.10 0.02 9.4 72 4 3 1 3 8 2 0  
5 1.61 1.94 76.4 -1.53 -0.60 16.4 87 7 2 6 4 0 2 0  
6 1.60 2.20 80.8 -1.03 -0.31 11.9 81 6 4 9 4 2 4 0  
7 1.64 2.17 87.5 -0.38 -0.07 10.2 74 5 3 3 5 8 2 0  
8 1.07 2.40 239.2 -1.14 -0.26 17.7 79 12 13 14 9 7 3 1  
9 1.07 2.57 33.2 1.75 0.34 2.2 70 1 1 1 12 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer