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PDBsum entry 2a3v

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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 2a3v calculated with MOLE 2.0 PDB id
2a3v
Pores calculated on whole structure Pores calculated excluding ligands

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6 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.83 3.83 26.6 -1.14 -0.56 14.9 84 3 1 0 2 1 0 0  DC 22 G DT 23 G DT 26 H DT 27 H
2 1.95 2.09 39.6 -1.49 -0.35 14.5 71 5 1 1 2 3 2 0  DC 22 G DT 23 G DT 12 H DC 13 H DC 14 H DT 26 H
3 3.44 3.45 46.8 -0.88 -0.58 13.2 72 2 2 0 2 2 0 0  DC 19 E DG 20 E DC 21 E DC 18 G DC 19 G DG 20 G
DC 21 G DC 22 G DT 26 H DT 28 H DG 29 H
4 1.47 1.58 81.7 -1.94 -0.61 20.9 78 9 2 2 1 2 0 0  DC 5 E DG 8 E DT 9 E DG 16 E DC 17 E DC 18 E DC
19 E DG 20 E DC 21 E DG 29 F DT 30 F DT 31 F DA
32 F DA 34 F DA 35 F DC 36 F DC 37 F
5 1.42 1.68 110.5 -1.47 -0.64 17.0 76 12 3 2 2 3 0 0  DC 5 E DG 8 E DT 9 E DG 16 E DC 17 E DC 18 E DC
19 E DT 30 F DT 31 F DA 32 F DA 34 F DA 35 F DC
36 F DC 37 F DC 18 G DC 19 G DG 20 G DC 21 G DC
22 G DT 26 H DT 28 H DG 29 H
6 1.20 1.36 164.0 -1.57 -0.48 19.5 79 16 5 6 5 4 1 0  DC 5 E DG 8 E DT 9 E DG 16 E DC 17 E DC 18 E DC
19 E DT 30 F DT 31 F DA 32 F DA 34 F DA 35 F DC
36 F DC 37 F DT 9 G DT 10 G DC 17 G DC 18 G DC 19
G DT 31 H DA 32 H

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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