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PDBsum entry 2a3v

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Top Page protein dna_rna Protein-protein interface(s) tunnels links
Tunnel analysis for: 2a3v calculated with MOLE 2.0 PDB id
2a3v
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.35 1.58 34.1 -1.13 -0.61 13.2 73 4 0 1 1 0 0 1  DT 23 E DA 24 E DA 25 E DG 22 F DG 23 F DC 24 F
DG 25 F DT 26 F
2 1.35 1.57 48.1 -1.56 -0.29 24.9 78 9 3 1 3 2 0 1  DG 22 F DG 23 F
3 1.35 1.57 54.1 -2.19 -0.41 26.6 80 11 3 2 2 1 0 1  DG 22 F DG 23 F
4 1.36 1.57 55.7 -0.81 -0.22 16.6 79 6 2 1 3 2 0 1  DC 19 E DG 20 E DG 22 F DG 23 F DC 17 G DC 18 G
5 1.35 1.57 84.8 -1.54 -0.36 20.7 78 13 4 2 4 2 1 1  DG 22 F DG 23 F DT 9 G DC 17 G DT 31 H DA 32 H
6 1.19 1.37 17.1 3.85 1.37 0.2 70 0 0 0 9 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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