PDBsum entry 2a3a

Tunnel analysis for: 2a3a calculated with

MOLE 2.0

PDB id

2a3a

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.30

1.30

16.7

0.30

0.24

6.6

71

1

1

1

4

3

2

0

2

1.25

1.33

17.6

0.17

0.18

6.6

69

1

1

1

3

3

2

0

3

1.28

1.37

19.2

-0.84

-0.17

12.0

75

1

3

0

4

1

2

0

4

1.19

1.30

31.7

-0.25

0.40

8.8

60

1

1

1

2

6

2

0

TEP 1435 A TEP 1436 A

5

1.19

1.29

33.3

-1.13

0.15

12.8

65

1

3

0

3

4

2

0

TEP 1435 A TEP 1436 A

6

1.40

2.84

17.1

-0.49

-0.20

11.6

91

1

1

2

3

0

1

0

7

1.40

2.84

17.5

-0.65

-0.28

13.8

88

2

2

2

3

0

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.