PDBsum entry 2a1m Go to PDB code:  Tunnel analysis for: 2a1m calculated with MOLE 2.0 PDB id 2a1m Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.17 3.22 16.9 -2.16 -0.93 27.5 85 1 5 1 0 0 0 0   2 2.19 2.52 19.9 -2.05 -0.63 23.7 78 0 5 1 1 0 2 0  TRS 2430 B 3 2.24 3.07 22.2 -1.99 -0.67 25.5 86 3 4 2 1 0 2 0   4 1.73 2.28 22.3 -2.40 -0.80 28.6 78 1 5 1 0 0 1 0  TRS 2430 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.