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PDBsum entry 1z9c

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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 1z9c calculated with MOLE 2.0 PDB id
1z9c
Pores calculated on whole structure Pores calculated excluding ligands

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6 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.27 2.27 31.4 -0.76 -0.77 6.0 93 1 1 1 0 0 1 0  DT 14 I DA 15 I DT 16 I DA 17 I DC 18 I DA 19 I
DT 14 J DA 15 J DT 16 J DA 17 J DC 18 J DA 19 J D
A 20 J
2 1.32 1.32 31.8 -0.82 -0.72 7.0 82 2 0 0 0 0 3 0  DA 15 G DT 16 G DA 17 G DC 18 G DA 19 G DA 20 G
DT 14 H DA 15 H DT 16 H DA 17 H DC 18 H DA 19 H
3 2.36 2.36 33.6 -0.81 -0.73 6.8 90 1 0 1 0 0 2 0  DT 14 G DA 15 G DT 16 G DA 17 G DC 18 G DA 19 G D
A 20 G DT 14 H DA 15 H DT 16 H DA 17 H DC 18 H DA
19 H DA 20 H
4 1.56 2.63 124.3 -0.59 -0.23 15.5 77 8 4 5 10 1 3 0  DT 8 G
5 1.32 1.78 30.5 -1.81 -0.65 21.0 83 2 1 0 0 0 1 0  DT 14 K DA 15 K DC 18 L DA 19 L DA 20 L
6 2.33 2.33 31.2 -1.00 -0.72 9.9 85 1 1 0 0 0 2 0  DT 14 K DA 15 K DT 16 K DA 17 K DC 18 K DA 19 K
DT 14 L DA 15 L DT 16 L DA 17 L DC 18 L DA 19 L D
A 20 L

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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