PDBsum entry 1z8d Go to PDB code:  Tunnel analysis for: 1z8d calculated with MOLE 2.0 PDB id 1z8d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 2 tunnels, coloured by tunnel radius 2 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.37 1.48 56.3 -0.63 -0.02 11.6 81 7 3 4 8 4 1 0  LLP 680 A GLC 901 A 2 1.57 1.70 19.6 0.00 -0.08 15.2 75 2 1 1 3 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.