PDBsum entry 1yyf Go to PDB code:  Pore analysis for: 1yyf calculated with MOLE 2.0 PDB id 1yyf Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   11 pores, coloured by radius 11 pores, coloured by radius 11 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.72 1.72 32.7 -1.14 -0.41 19.3 95 5 1 3 3 0 0 0   2 1.22 1.34 37.9 1.12 0.35 11.1 78 5 4 0 8 1 0 0   3 1.28 1.75 65.7 -2.32 -0.65 27.2 83 11 7 5 1 1 0 0   4 1.38 1.80 78.5 -2.16 -0.50 28.8 85 12 9 5 4 2 0 0   5 1.34 1.79 103.5 -0.51 0.00 22.2 83 13 9 3 17 0 0 0  ADP 905 A 6 1.27 1.43 111.1 -0.30 0.00 20.0 82 9 9 3 16 1 0 0   7 1.14 1.85 126.9 -1.84 -0.43 23.9 85 13 11 9 8 1 0 0  ADP 905 A 8 2.53 4.92 151.7 -2.49 -0.56 32.4 85 16 15 9 8 0 0 0   9 1.11 1.08 160.5 0.08 0.18 18.5 82 11 11 4 27 0 0 0   10 1.32 1.63 198.6 -1.01 -0.14 22.0 82 15 16 8 18 2 1 0   11 2.72 3.83 29.0 -1.51 -0.62 20.6 92 1 1 4 1 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.