PDBsum entry 1yxq Go to PDB code:  Tunnel analysis for: 1yxq calculated with MOLE 2.0 PDB id 1yxq Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 1.54 22.4 -0.35 -0.30 10.9 96 1 3 4 4 0 1 0  EDO 9002 B 2 1.15 1.55 28.8 -0.82 -0.53 13.8 89 0 3 4 4 0 4 0  EDO 9001 A SWI 600 B EDO 9002 B 3 1.18 1.88 34.3 0.74 -0.13 4.5 95 0 2 5 7 0 1 0  SWI 600 B EDO 9002 B 4 1.17 1.63 39.7 -0.39 -0.52 9.7 98 1 4 5 5 0 1 0  SWI 600 B EDO 9002 B 5 1.36 1.51 17.8 -0.25 0.01 17.1 90 2 1 1 5 0 1 0  HIC 73 A 6 1.35 1.50 30.9 -0.93 -0.45 16.8 84 3 3 2 4 0 1 0  ATP 1380 A MG 1390 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.