PDBsum entry 1ynf Go to PDB code:  Pore analysis for: 1ynf calculated with MOLE 2.0 PDB id 1ynf Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 pores, coloured by radius 9 pores, coloured by radius 9 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.52 1.57 46.7 -0.28 -0.03 9.2 82 4 1 5 7 2 0 0  MSE 49 E MSE 106 E MSE 385 E MSE 386 E 2 3.76 4.33 72.8 -1.72 -0.46 19.8 80 5 6 6 3 2 1 0  MSE 285 C MSE 385 C MSE 386 C 3 2.64 2.86 74.8 -1.56 -0.62 15.7 84 5 6 7 3 2 2 0  MSE 285 C 4 1.16 1.34 75.3 -1.00 -0.28 12.9 74 7 2 2 5 3 4 0  MSE 106 D 5 1.52 1.75 86.9 -0.52 -0.16 10.2 77 8 2 5 9 5 2 0  MSE 49 C MSE 106 C MSE 385 C MSE 386 C 6 2.93 3.15 102.7 -1.62 -0.50 19.8 82 8 11 7 4 4 1 0  MSE 385 C MSE 386 C 7 1.47 1.63 121.2 -0.89 -0.19 13.3 79 8 4 6 9 4 2 0  MSE 49 D MSE 106 D MSE 385 D MSE 386 D 8 1.32 1.48 147.7 -0.80 -0.37 11.8 76 9 4 6 10 4 4 0  MSE 49 A MSE 106 A MSE 317 A MSE 318 A MSE 385 A MSE 386 A 9 1.34 2.32 178.8 -1.13 -0.32 14.8 82 8 8 13 11 4 3 0  MSE 49 A MSE 106 A MSE 317 A MSE 318 A MSE 385 A MSE 386 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.