PDBsum entry 1yif Go to PDB code:  Tunnel analysis for: 1yif calculated with MOLE 2.0 PDB id 1yif Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.42 1.60 16.7 -0.60 -0.29 7.3 84 3 0 3 1 2 0 0   2 1.40 1.41 16.3 -0.75 -0.29 8.6 84 3 0 3 1 2 0 0   3 1.37 1.56 17.8 -0.78 -0.31 9.0 87 3 0 4 1 2 0 0   4 1.41 1.41 17.4 -0.90 -0.32 9.2 87 3 0 4 1 2 0 0   5 1.40 1.44 16.6 -0.87 -0.52 15.0 88 1 2 1 3 0 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.