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PDBsum entry 1yi2
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Tunnel analysis for: 1yi2 calculated with  MOLE 2.0
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PDB id
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1yi2
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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7 tunnels,
coloured by tunnel radius |
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25 tunnels,
coloured by
tunnel radius
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25 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.29 |
1.45 |
126.5 |
-0.52 |
-0.72 |
5.3 |
85 |
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1 |
2 |
3 |
3 |
0 |
1 |
0 |
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U 624 0 U 625 0 U 626 0 A 632 0 C 633 0 G 634 0 C
764 0 G 765 0 G 901 0 G 956 0 A 957 0 G 958 0 C
959 0 G 960 0 U 966 0 C 1000 0 U 1001 0 G 1002 0
U 1003 0 C 1044 0 G 1045 0 G 1046 0 U 1047 0 G
1048 0 C 1049 0 G 1050 0 C 1051 0 G 1052 0 G 1055
0 C 1060 0 C 1061 0 U 1062 0 A 1358 0 U 1359 0 C
1360 0 A 2101 0 G 2481 0 G 2482 0 A 2483 0 C 2533
0 U 2535 0 G 2537 0 NA 8550 0 NA 8552 0 A 77 9 U
79 9 A 80 9 C 81 9 A 93 9 G 94 9 C 95 9 A 105 9
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2 |
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1.14 |
1.33 |
128.1 |
-0.64 |
-0.68 |
8.1 |
84 |
4 |
1 |
1 |
2 |
0 |
1 |
0 |
G 118 0 A 119 0 A 120 0 U 123 0 C 124 0 U 125 0 C
764 0 G 765 0 A 766 0 U 768 0 C 769 0 C 770 0 G
771 0 G 772 0 A 773 0 C 774 0 U 864 0 G 865 0 U
866 0 A 867 0 G 868 0 G 869 0 G 887 0 U 888 0 C
889 0 A 895 0 C 896 0 A 897 0 U 1359 0 C 1360 0 G
1453 0 U 1454 0 C 1455 0 C 1456 0 G 1460 0 U 1461
0 C 1462 0 C 1474 0 G 1475 0 C 1483 0 G 1484 0 A
1485 0 A 1486 0 A 2101 0 A 2479 0 G 2480 0
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3 |
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1.18 |
1.46 |
129.6 |
-0.82 |
-0.71 |
10.4 |
84 |
3 |
5 |
2 |
2 |
0 |
1 |
0 |
U 214 0 A 215 0 U 651 0 G 652 0 G 681 0 A 682 0 G
683 0 G 684 0 C 685 0 A 686 0 C 687 0 G 689 0 G
690 0 G 691 0 G 742 0 A 756 0 A 761 0 C 762 0 C
763 0 C 764 0 G 765 0 A 766 0 A 895 0 C 896 0 A
897 0 A 926 0 U 927 0 G 1037 0 G 1038 0 G 1039 0
A 1040 0 U 1041 0 U 1359 0 C 1360 0 A 2101 0 A
2479 0 G 2480 0 NA 8541 0
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4 |
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1.14 |
1.33 |
130.2 |
-0.66 |
-0.68 |
7.6 |
86 |
4 |
1 |
2 |
2 |
0 |
1 |
0 |
U 651 0 G 652 0 A 686 0 C 687 0 A 688 0 A 698 0 C
699 0 G 702 0 C 728 0 C 729 0 G 742 0 G 743 0 G
744 0 G 745 0 A 746 0 G 747 0 A 756 0 A 761 0 C
762 0 C 763 0 C 764 0 G 765 0 A 766 0 A 895 0 C
896 0 A 897 0 A 926 0 U 927 0 G 1037 0 G 1038 0 G
1039 0 A 1040 0 U 1041 0 U 1359 0 C 1360 0 A 2101
0 A 2479 0 G 2480 0
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5 |
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1.18 |
1.51 |
132.9 |
-0.74 |
-0.65 |
7.3 |
83 |
4 |
1 |
2 |
2 |
0 |
2 |
0 |
U 651 0 G 740 0 C 741 0 G 742 0 A 756 0 A 761 0 C
762 0 C 763 0 C 764 0 G 765 0 A 766 0 A 895 0 C
896 0 A 897 0 A 926 0 U 927 0 G 1037 0 G 1038 0 G
1039 0 A 1040 0 U 1041 0 U 1359 0 C 1360 0 A 2101
0 G 2397 0 A 2398 0 A 2430 0 C 2431 0 C 2432 0 A
2433 0 A 2434 0 U 2435 0 U 2436 0 A 2437 0 C 2439
0 G 2452 0 G 2453 0 C 2454 0 A 2455 0 A 2456 0 A
2479 0 G 2480 0
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6 |
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1.19 |
1.52 |
131.4 |
-0.61 |
-0.61 |
7.1 |
83 |
3 |
1 |
2 |
2 |
1 |
1 |
0 |
U 651 0 G 652 0 U 701 0 G 703 0 C 704 0 C 719 0 G
720 0 A 721 0 G 722 0 G 723 0 G 724 0 G 742 0 G
743 0 G 744 0 A 756 0 A 761 0 C 762 0 C 763 0 C
764 0 G 765 0 A 766 0 A 895 0 C 896 0 A 897 0 A
926 0 U 927 0 G 1036 0 G 1037 0 G 1038 0 G 1039 0
A 1040 0 U 1041 0 U 1359 0 C 1360 0 A 2101 0 A
2479 0 G 2480 0
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7 |
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1.29 |
1.45 |
133.3 |
-0.86 |
-0.60 |
11.4 |
82 |
6 |
2 |
4 |
3 |
1 |
1 |
0 |
A 466 0 G 467 0 U 468 0 A 476 0 A 495 0 G 496 0 A
497 0 A 498 0 G 499 0 G 514 0 C 764 0 G 765 0 A
766 0 A 767 0 U 768 0 A 844 0 A 882 0 U 883 0 U
888 0 C 889 0 A 895 0 C 896 0 A 897 0 U 1359 0 C
1360 0 G 1389 0 A 1390 0 G 1425 0 C 1426 0 A 1427
0 C 1428 0 A 1689 0 A 2101 0 A 2479 0 G 2480 0
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8 |
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1.29 |
1.47 |
132.6 |
-0.72 |
-0.69 |
9.1 |
82 |
5 |
3 |
1 |
2 |
0 |
1 |
0 |
C 764 0 G 765 0 A 766 0 U 768 0 C 769 0 C 770 0 G
771 0 G 772 0 A 773 0 U 866 0 A 867 0 G 868 0 G
869 0 G 887 0 U 888 0 C 889 0 A 895 0 C 896 0 A
897 0 U 1359 0 C 1360 0 A 1458 0 A 1459 0 G 1460
0 U 1461 0 C 1474 0 G 1475 0 A 1476 0 C 1477 0 U
1478 0 G 1479 0 A 1533 0 C 1534 0 G 1655 0 A 1656
0 A 1657 0 C 1862 0 G 1863 0 C 1872 0 A 2101 0 A
2479 0 G 2480 0
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9 |
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1.26 |
1.26 |
132.6 |
-0.66 |
-0.72 |
7.7 |
86 |
2 |
3 |
2 |
2 |
0 |
1 |
0 |
U 624 0 U 625 0 U 626 0 A 632 0 C 633 0 G 634 0 C
764 0 G 765 0 G 901 0 G 911 0 A 912 0 A 913 0 A
914 0 C 915 0 C 1044 0 G 1045 0 G 1046 0 U 1047 0
U 1062 0 G 1063 0 U 1064 0 G 1065 0 U 1066 0 A
1067 0 C 1068 0 G 1087 0 A 1088 0 G 1089 0 C 1262
0 C 1263 0 U 1264 0 G 1265 0 U 1266 0 C 1267 0 G
1284 0 U 1285 0 A 1286 0 A 1287 0 U 1288 0 G 1290
0 A 1291 0 A 1358 0 U 1359 0 C 1360 0 A 2101 0 G
2481 0 G 2482 0 A 2483 0 C 2533 0 U 2535 0 G 2537
0 NA 8550 0
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10 |
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1.29 |
1.48 |
139.6 |
-1.00 |
-0.61 |
13.1 |
81 |
8 |
3 |
4 |
3 |
1 |
1 |
0 |
A 466 0 G 467 0 U 468 0 A 476 0 U 488 0 G 499 0 G
500 0 G 501 0 A 502 0 G 503 0 A 509 0 U 510 0 G
512 0 A 513 0 G 514 0 C 764 0 G 765 0 A 766 0 A
767 0 U 768 0 A 844 0 A 882 0 U 883 0 U 888 0 C
889 0 A 895 0 C 896 0 A 897 0 U 1359 0 C 1360 0 A
1427 0 C 1428 0 A 1689 0 A 2101 0 A 2479 0 G 2480
0
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11 |
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1.27 |
1.44 |
139.7 |
-0.41 |
-0.72 |
4.8 |
83 |
1 |
1 |
1 |
2 |
0 |
1 |
0 |
U 624 0 U 625 0 U 626 0 A 632 0 C 633 0 G 634 0 C
764 0 G 765 0 G 901 0 C 1044 0 G 1045 0 G 1046 0
U 1047 0 G 1048 0 C 1049 0 A 1058 0 G 1059 0 C
1060 0 C 1061 0 U 1062 0 G 1119 0 U 1120 0 C 1126
0 U 1128 0 C 1129 0 U 1130 0 C 1228 0 A 1231 0 A
1232 0 A 1236 0 U 1237 0 C 1238 0 A 1358 0 U 1359
0 C 1360 0 A 2101 0 G 2481 0 G 2482 0 A 2483 0 U
2492 0 C 2493 0 G 2524 0 G 2525 0 C 2533 0 U 2535
0 G 2537 0 A 2776 0 G 2777 0 A 2792 0 MG 8025 0 N
A 8550 0 C 91 9 G 92 9 A 93 9
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12 |
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1.19 |
1.19 |
143.4 |
-0.48 |
-0.72 |
5.4 |
87 |
2 |
1 |
1 |
2 |
0 |
1 |
0 |
U 624 0 U 625 0 U 626 0 A 632 0 C 633 0 G 634 0 C
764 0 G 765 0 G 901 0 U 909 0 C 910 0 G 911 0 A
913 0 A 914 0 C 915 0 A 929 0 C 930 0 C 931 0 C
933 0 C 934 0 A 943 0 U 1030 0 G 1031 0 A 1032 0
C 1033 0 C 1044 0 G 1045 0 G 1046 0 U 1047 0 U
1062 0 G 1063 0 U 1064 0 G 1065 0 U 1066 0 G 1269
0 U 1270 0 A 1271 0 C 1272 0 U 1279 0 A 1280 0 C
1281 0 C 1289 0 U 1298 0 G 1299 0 A 1358 0 U 1359
0 C 1360 0 A 2101 0 G 2481 0 G 2482 0 A 2483 0 C
2533 0 U 2535 0 G 2537 0 NA 8550 0
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13 |
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1.22 |
1.45 |
142.9 |
-0.40 |
-0.68 |
5.5 |
85 |
2 |
1 |
1 |
3 |
0 |
1 |
0 |
C 764 0 G 765 0 A 766 0 A 767 0 U 768 0 U 825 0 G
828 0 G 830 0 U 831 0 C 839 0 U 845 0 A 846 0 C
847 0 C 848 0 C 849 0 U 850 0 U 883 0 C 884 0 U
888 0 A 895 0 C 896 0 A 897 0 U 1359 0 C 1360 0 G
1378 0 A 1379 0 A 1407 0 A 1712 0 G 1713 0 G 1756
0 U 1757 0 U 1758 0 A 1759 0 C 1816 0 U 1817 0 C
1818 0 G 1837 0 U 1838 0 A 2101 0 A 2103 0 U 2478
0 A 2479 0 G 2480 0 C 2644 0 U 2645 0 G 2646 0 C
2752 0 G 2753 0 MG 8071 0 NA 8579 0 ERY 9000 0
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14 |
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1.23 |
1.57 |
192.5 |
-0.95 |
-0.60 |
11.8 |
82 |
10 |
5 |
4 |
4 |
2 |
1 |
0 |
C 29 0 C 31 0 C 87 0 G 320 0 A 321 0 G 322 0 C
323 0 G 324 0 C 330 0 G 332 0 G 333 0 G 334 0 U
335 0 A 337 0 C 338 0 A 339 0 A 340 0 C 341 0 A
462 0 A 466 0 G 467 0 U 468 0 A 476 0 G 479 0 C
480 0 U 481 0 G 482 0 C 483 0 A 484 0 G 514 0 C
764 0 G 765 0 A 766 0 A 767 0 U 768 0 A 844 0 A
882 0 U 883 0 U 888 0 C 889 0 A 895 0 C 896 0 A
897 0 C 1342 0 U 1359 0 C 1360 0 A 1427 0 C 1428
0 A 1689 0 A 2101 0 A 2479 0 G 2480 0
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15 |
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1.24 |
1.59 |
198.6 |
-1.05 |
-0.63 |
12.6 |
83 |
11 |
4 |
6 |
4 |
1 |
2 |
0 |
C 31 0 C 62 0 U 63 0 G 79 0 C 85 0 A 86 0 C 101 0
A 102 0 U 300 0 C 301 0 A 302 0 C 303 0 G 304 0 A
305 0 A 306 0 C 344 0 G 345 0 C 444 0 U 445 0 C
461 0 A 462 0 A 466 0 G 467 0 U 468 0 A 476 0 G
479 0 C 480 0 G 514 0 C 764 0 G 765 0 A 766 0 A
767 0 U 768 0 A 844 0 A 882 0 U 883 0 U 888 0 C
889 0 A 895 0 C 896 0 A 897 0 U 1359 0 C 1360 0 A
1427 0 C 1428 0 A 1689 0 A 2101 0 A 2479 0 G 2480
0
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16 |
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1.24 |
1.60 |
204.7 |
-0.41 |
-0.72 |
4.8 |
85 |
2 |
1 |
1 |
3 |
0 |
1 |
0 |
C 764 0 G 765 0 A 766 0 A 767 0 U 768 0 G 787 0 A
788 0 C 789 0 A 827 0 G 828 0 A 829 0 G 830 0 U
831 0 C 839 0 U 845 0 A 846 0 C 847 0 C 848 0 C
849 0 U 850 0 U 883 0 C 884 0 U 888 0 A 895 0 C
896 0 A 897 0 U 1359 0 C 1360 0 A 1406 0 A 1407 0
U 1408 0 G 1490 0 G 1491 0 A 1493 0 G 1512 0 C
1513 0 C 1514 0 U 1531 0 G 1532 0 G 1535 0 C 1536
0 C 1537 0 C 1575 0 G 1576 0 A 1616 0 C 1617 0 A
1642 0 C 1643 0 C 1644 0 A 1661 0 C 1662 0 G 1663
0 G 1665 0 C 1666 0 A 1667 0 U 1668 0 A 1682 0 G
1695 0 U 1696 0 G 1697 0 U 1698 0 C 1699 0 C 1700
0 A 1701 0 G 1837 0 U 1838 0 A 2101 0 A 2103 0 U
2478 0 A 2479 0 G 2480 0 C 2644 0 U 2645 0 G 2646
0 NA 8579 0 ERY 9000 0
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17 |
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1.22 |
1.62 |
204.8 |
-0.55 |
-0.71 |
6.6 |
82 |
5 |
2 |
1 |
3 |
0 |
1 |
0 |
C 764 0 G 765 0 A 766 0 A 767 0 U 768 0 A 788 0 C
789 0 A 827 0 G 828 0 A 829 0 G 830 0 U 831 0 C
839 0 U 845 0 A 846 0 C 847 0 C 848 0 C 849 0 U
850 0 U 883 0 C 884 0 U 888 0 A 895 0 C 896 0 A
897 0 U 1359 0 C 1360 0 A 1406 0 A 1407 0 U 1408
0 G 1410 0 U 1488 0 A 1496 0 G 1497 0 U 1505 0 C
1545 0 G 1546 0 A 1547 0 U 1548 0 C 1549 0 A 1550
0 C 1551 0 C 1564 0 C 1565 0 C 1566 0 G 1567 0 G
1568 0 U 1569 0 C 1617 0 A 1641 0 A 1642 0 C 1643
0 A 1682 0 G 1695 0 U 1696 0 G 1697 0 U 1698 0 C
1699 0 C 1700 0 A 1701 0 A 1717 0 G 1837 0 U 1838
0 A 2101 0 A 2103 0 U 2478 0 A 2479 0 G 2480 0 C
2644 0 U 2645 0 G 2646 0 NA 8579 0 ERY 9000 0
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18 |
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1.24 |
1.60 |
209.4 |
-0.89 |
-0.61 |
11.1 |
80 |
9 |
3 |
4 |
4 |
2 |
1 |
0 |
C 31 0 G 44 0 G 47 0 A 48 0 A 49 0 C 62 0 U 63 0
G 64 0 C 65 0 C 85 0 A 86 0 A 102 0 C 103 0 A 104
0 G 105 0 U 107 0 U 108 0 U 109 0 C 110 0 C 111 0
A 114 0 G 116 0 C 124 0 U 125 0 A 128 0 A 129 0 C
443 0 C 444 0 C 461 0 A 462 0 A 466 0 G 467 0 U
468 0 A 476 0 G 479 0 C 480 0 G 514 0 C 764 0 G
765 0 A 766 0 A 767 0 U 768 0 A 844 0 A 882 0 U
883 0 U 888 0 C 889 0 A 895 0 C 896 0 A 897 0 U
1359 0 C 1360 0 A 1427 0 C 1428 0 A 1689 0 A 2101
0 A 2479 0 G 2480 0 NA 8529 0
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19 |
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1.15 |
1.15 |
18.8 |
-1.37 |
-0.63 |
17.6 |
79 |
2 |
1 |
0 |
1 |
0 |
1 |
0 |
C 136 0 U 137 0 C 139 0 A 261 0
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20 |
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1.15 |
1.15 |
26.9 |
-1.35 |
-0.68 |
17.8 |
80 |
2 |
2 |
0 |
1 |
0 |
1 |
0 |
C 136 0 U 137 0 C 260 0 A 261 0
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21 |
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1.19 |
2.03 |
19.6 |
1.54 |
0.36 |
11.9 |
85 |
0 |
3 |
0 |
7 |
1 |
0 |
0 |
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22 |
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1.14 |
1.76 |
16.0 |
1.33 |
0.50 |
10.1 |
84 |
0 |
2 |
0 |
6 |
1 |
1 |
0 |
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23 |
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1.35 |
1.53 |
22.2 |
-0.48 |
0.14 |
13.6 |
87 |
2 |
2 |
2 |
5 |
2 |
0 |
0 |
U 263 0 G 264 0
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24 |
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1.34 |
1.34 |
23.6 |
-0.40 |
0.15 |
13.2 |
85 |
2 |
2 |
2 |
6 |
2 |
0 |
0 |
U 263 0 G 264 0
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25 |
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1.21 |
1.23 |
19.2 |
-0.69 |
-0.74 |
3.0 |
78 |
0 |
0 |
2 |
1 |
0 |
1 |
0 |
A 1166 0 G 1167 0 U 1180 0 A 1181 0 C 1182 0 C
1183 0 A 1192 0
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program