PDBsum entry 1ydp Go to PDB code:  Tunnel analysis for: 1ydp calculated with MOLE 2.0 PDB id 1ydp Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.65 2.92 18.0 -0.89 0.20 10.4 78 1 3 2 2 3 1 0   2 1.51 1.68 21.1 -1.03 -0.11 20.7 75 2 3 1 2 3 0 0   3 1.52 1.69 24.4 -1.84 -0.27 27.7 80 3 3 2 2 3 0 0   4 1.58 1.75 33.3 -0.74 -0.20 8.6 69 2 1 3 1 7 1 0   5 1.16 1.91 20.6 -2.12 -0.60 27.1 82 2 3 0 1 0 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.