PDBsum entry 1ydh Go to PDB code:  Tunnel analysis for: 1ydh calculated with MOLE 2.0 PDB id 1ydh Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.33 1.33 36.1 0.07 0.19 11.9 70 3 4 0 7 4 1 0  MSE 95 A MSE 102 A MSE 125 A 2 1.35 1.35 43.4 -0.68 -0.21 16.3 76 5 3 2 5 3 0 0  MSE 102 A MSE 125 A 3 1.33 1.33 38.0 0.07 0.10 11.4 74 3 4 0 5 3 1 0  MSE 95 B MSE 102 B MSE 125 B 4 1.33 1.33 39.0 0.06 0.09 11.5 75 3 4 0 6 3 1 0  MSE 95 B MSE 102 B MSE 125 B 5 1.33 1.33 43.6 -0.25 -0.13 14.1 78 4 3 2 5 2 0 0  MSE 102 B MSE 125 B 6 1.34 1.33 44.6 -0.14 -0.11 13.4 80 4 3 2 6 2 0 0  MSE 102 B MSE 125 B 7 2.26 2.26 17.3 -2.13 -0.54 18.0 86 2 1 4 1 0 1 0  EDO 700 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.