PDBsum entry 1y5h Go to PDB code:  Tunnel analysis for: 1y5h calculated with MOLE 2.0 PDB id 1y5h Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.56 1.59 15.1 -0.34 -0.16 5.5 76 2 0 0 3 1 2 0  MSE 48 B 2 1.51 1.53 15.5 -0.76 -0.34 7.8 77 1 1 1 2 1 2 0  MSE 48 B 3 1.57 1.77 19.3 0.45 0.28 9.0 85 2 0 1 5 0 2 0  MSE 48 B 4 1.41 1.41 16.1 -0.55 -0.35 7.5 82 1 1 1 3 1 1 0  MSE 48 A 5 1.40 1.40 16.4 -0.15 -0.15 5.1 81 1 0 0 4 1 1 0  MSE 48 A 6 1.40 1.40 23.0 0.29 0.11 7.8 83 2 0 1 6 1 2 0  MSE 48 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.