PDBsum entry 1y2m Go to PDB code:  Pore analysis for: 1y2m calculated with MOLE 2.0 PDB id 1y2m Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   14 pores, coloured by radius 19 pores, coloured by radius 19 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.11 1.21 28.6 -0.21 -0.23 5.1 90 1 1 2 3 0 2 0   2 2.90 3.14 41.3 -0.68 -0.38 9.9 79 5 2 5 6 1 0 0  MSE 497 C 3 2.28 2.44 58.5 -0.89 -0.33 15.3 78 9 3 5 9 1 1 0  MSE 497 A 4 2.12 2.30 59.8 -1.23 -0.56 15.2 81 7 6 4 6 1 0 0  MSE 497 A 5 3.00 3.13 84.3 -0.59 -0.21 12.4 76 8 2 8 13 2 2 0  MSE 497 A MSE 497 D 6 1.52 1.52 84.2 -0.68 -0.21 14.2 80 3 3 4 5 4 2 0  MSE 250 D 7 2.12 2.30 85.6 -0.82 -0.38 11.8 79 6 5 7 10 2 1 0  MSE 497 A MSE 497 D 8 1.22 1.74 90.1 -1.11 -0.19 18.9 76 4 5 3 7 5 2 0  MSE 250 D 9 1.45 1.71 133.9 -0.82 -0.34 11.1 88 8 4 12 11 1 3 0  MSE 51 C 10 1.43 1.43 139.7 -0.90 -0.22 19.4 80 9 7 5 8 4 1 0   11 1.21 1.58 178.7 -1.19 -0.37 15.3 88 8 4 11 8 3 2 0   12 1.54 1.53 200.8 -1.92 -0.50 26.3 83 15 13 11 6 6 2 0   13 1.63 1.64 211.0 -1.83 -0.48 25.4 82 15 15 10 9 5 4 0  MSE 250 D 14 1.40 1.61 223.2 -1.57 -0.49 20.5 86 13 13 15 10 3 4 0   15 1.36 2.47 233.3 -1.47 -0.46 19.6 85 13 15 14 13 2 6 0  MSE 250 D 16 1.27 1.61 253.2 -0.80 -0.27 15.2 78 15 10 14 18 7 2 0  MSE 497 B MSE 497 C 17 1.11 1.09 264.8 -2.31 -0.56 31.2 85 13 16 6 10 1 3 0   18 1.21 1.39 301.4 -1.16 -0.28 21.3 81 13 12 10 13 6 2 0   19 1.30 1.42 305.6 -0.95 -0.28 19.0 82 12 12 10 14 4 4 0  MSE 250 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.