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PDBsum entry 1y2m

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Lyase PDB id
1y2m
Contents
Protein chains
665 a.a.
Waters ×1915

References listed in PDB file
Key reference
Title Structure-Based chemical modification strategy for enzyme replacement treatment of phenylketonuria.
Authors L.Wang, A.Gamez, C.N.Sarkissian, M.Straub, M.G.Patch, G.W.Han, S.Striepeke, P.Fitzpatrick, C.R.Scriver, R.C.Stevens.
Ref. Mol Genet Metab, 2005, 86, 134-140. [DOI no: 10.1016/j.ymgme.2005.05.012]
PubMed id 16006165
Abstract
Structure-based protein engineering coupled with chemical modifications (e.g., pegylation) is a powerful combination to significantly improve the development of proteins as therapeutic agents. As a test case, phenylalanine ammonia-lyase (PAL, EC 4.3.1.5) was selected for enzyme replacement therapy in phenylketonuria [C.R. Scriver, S. Kaufman, Hyperphenylalaninemia:phenylalanine Hydroxylase Deficiency. The Metabolic and Molecular Bases of Inherited Disease, McGraw-Hill, New York, 2001, Chapter 77], an inherited metabolic disorder (OMIM 261600) causing mental retardation due to deficiency of the enzyme l-phenylalanine hydroxylase (EC 1.14.16.1). Previous in vivo studies of recombinant PAL demonstrated a lowering of blood l-phenylalanine levels; yet, the metabolic effect was not sustained due to protein degradation and immunogenicity [C.N. Sarkissian, Z. Shao, F. Blain, R. Peevers, H. Su, R. Heft, T.M. Chang, C.R. Scriver, A different approach to treatment of phenylketonuria:phenylalanine degradation with recombinant phenylalanine ammonia lyase, Proc. Natl. Acad. Sci. USA 96 (1999) 2339; J.A. Hoskins, G. Jack, H.E. Wade, R.J. Peiris, E.C. Wright, D.J. Starr, J. Stern, Enzymatic control of phenylalanine intake in phenylketonuria, Lancet 1 (1980) 392; C.M. Ambrus, S. Anthone, C. Horvath, K. Kalghatgi, A.S. Lele, G. Eapen, J.L. Ambrus, A.J. Ryan, P. Li, Extracorporeal enzyme reactors for depletion of phenylalanine in phenylketonuria, Ann. Intern. Med. 106 (1987) 531]. Here, we report the 1.6A three-dimensional structure of Rhodosporidium toruloides PAL, structure-based molecular engineering, pegylation of PAL, as well as in vitro and in vivo PKU mouse model studies on pegylated PAL formulations. Our results show that pegylation of R. toruloides PAL leads to promising therapeutic efficacy after subcutaneous injection by enhancing the in vivo activity, lowering plasma phenylalanine, and leading to reduced immunogenicity. The three-dimensional structure of PAL provides a basis for understanding the properties of pegylated forms of PAL and strategies for structure-based re-engineering of PAL for PKU treatment.
Secondary reference #1
Title A different approach to treatment of phenylketonuria: phenylalanine degradation with recombinant phenylalanine ammonia lyase.
Authors C.N.Sarkissian, Z.Shao, F.Blain, R.Peevers, H.Su, R.Heft, T.M.Chang, C.R.Scriver.
Ref. Proc Natl Acad Sci U S A, 1999, 96, 2339-2344. [DOI no: 10.1073/pnas.96.5.2339]
PubMed id 10051643
Full text Abstract
Figure 1.
Fig. 1. PAL gene from yeast R. toruloides was cloned in the expression vector pIBX-7 where transcription is controlled by the strong inducible tac promoter and terminated by the rRNA transcription terminator sequences rrnBT1 and rrnBT2. LacI^q represses the tac promoter, and hence isopropyl -D-thiogalactoside is required to release it from the promoter. The kanamycin resistance gene (Kan^R) is included in the construct to allow selection of cells containing the plasmid.
Figure 3.
Fig. 3. Injection i.p. of recombinant PAL enzyme reduces plasma phenylalanine in the ENU2/2 mouse (y axis is logarithmic scale) over time (x axis) (P < 0.05). Reduction of plasma phenylalanine by PAL shows a dose-response relationship (z axis). Data are normalized to the control (sham-treated) values for each animal at each point. Data depicted are the average of five paired series. The range of control (100%) values was 390-2,013 µmol/liter for animals receiving 2 units of PAL, 572-1,488 µmol/liter for animals receiving 20 units, and 504-1,474 µmol/liter for animals receiving 100 units.
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