PDBsum entry 1xpm Go to PDB code:  Tunnel analysis for: 1xpm calculated with MOLE 2.0 PDB id 1xpm Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   11 tunnels, coloured by tunnel radius 17 tunnels, coloured by tunnel radius 17 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.38 1.38 17.3 -2.25 -0.71 22.3 87 2 2 3 1 0 0 0   2 2.19 4.01 25.5 -1.94 -0.75 21.0 88 3 4 3 2 0 1 0   3 1.68 1.82 27.0 0.02 -0.33 9.6 94 3 3 2 7 0 0 0   4 1.63 1.81 27.9 -0.30 -0.33 10.8 94 2 3 2 5 0 0 0   5 1.13 1.13 28.4 -1.92 -0.83 18.1 85 2 3 3 2 0 0 0   6 2.32 2.32 28.4 -1.99 -0.77 20.2 88 2 4 3 2 0 1 0   7 1.28 1.53 29.1 -0.66 -0.39 13.3 94 3 3 3 7 0 0 0   8 1.12 1.12 29.2 -1.33 -0.73 12.4 86 3 1 2 1 0 0 0   9 1.95 2.17 30.9 -2.49 -0.85 25.2 87 3 4 4 2 0 0 0   10 1.32 1.48 31.9 -1.84 -0.72 18.9 87 4 2 3 1 0 0 0   11 1.28 1.51 40.9 -2.35 -0.75 23.3 89 3 5 4 3 0 1 0   12 1.27 1.51 44.8 -1.14 -0.51 17.1 92 4 5 3 7 0 0 0   13 1.58 1.84 32.8 -0.58 -0.35 8.9 86 1 1 5 3 5 1 0  SCY 111 A HMG 1401 A SO4 1502 A 14 1.57 1.57 38.6 -0.70 -0.32 10.2 84 3 1 4 4 5 1 0  SCY 111 A HMG 1401 A 15 1.57 1.82 31.7 -0.57 -0.27 8.4 85 2 1 4 4 5 1 0  SCY 111 C HMG 3401 C 16 1.55 1.55 30.8 -0.78 -0.35 9.9 83 3 1 4 3 5 1 0  SCY 111 D HMG 4401 D 17 1.55 1.80 30.4 -0.82 -0.38 9.8 82 3 1 4 2 5 1 0  SCY 111 B HMG 2401 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.