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PDBsum entry 1x9m

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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 1x9m calculated with MOLE 2.0 PDB id
1x9m
Pores calculated on whole structure Pores calculated excluding ligands

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6 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.78 1.78 30.4 -1.31 -0.59 18.3 80 3 2 0 3 0 0 0  DG 16 C DT 17 C DT 19 C DG 20 C DC 11 D DT 12 D D
A 13 D DC 14 D
2 1.24 1.58 43.5 -1.43 -0.49 19.7 75 4 3 2 4 0 1 0  DA 15 C DG 16 C DT 17 C DA 8 D DC 9 D
3 2.39 2.79 45.8 -0.42 0.10 13.5 65 4 2 0 4 2 1 0  DA 15 C DG 16 C DT 17 C DA 8 D DC 9 D
4 2.34 2.34 48.7 -1.91 -0.12 32.3 73 8 6 0 3 3 0 0  
5 1.32 2.77 55.9 -1.39 -0.41 21.3 77 6 5 4 7 3 0 0  DA 8 D
6 1.55 2.07 67.4 -0.52 -0.18 13.4 78 4 2 2 6 1 1 0  DA 15 C DT 17 C DT 19 C DG 20 C DA 21 C 8FG 4 D D
A 5 D DT 6 D
7 1.23 1.84 92.6 -0.87 -0.07 19.6 77 9 5 3 7 3 1 0  DA 15 C DT 17 C 2DT 22 C 8FG 4 D DA 5 D DT 6 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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