PDBsum entry 1w1v

Pore analysis for: 1w1v calculated with

MOLE 2.0

PDB id

1w1v

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

1 pore, coloured by radius

10 pores, coloured by radius

10 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.82

3.05

32.8

-1.26

0.21

14.0

64

1

2

1

1

6

2

0

GOL 1509 A GOL 1511 A GOL 1516 A ALJ 1520 A

2

1.68

1.68

33.5

-0.63

-0.09

8.6

75

1

2

5

1

6

0

0

GOL 1500 B GOL 1507 B GOL 1512 B

3

1.20

1.26

39.0

-1.20

-0.12

15.9

82

2

2

5

5

5

0

0

GOL 1500 A GOL 1506 A GOL 1517 A

4

1.67

1.67

39.2

-0.91

0.01

8.8

74

1

3

4

1

6

0

0

GOL 1500 B GOL 1507 B GOL 1510 B GOL 1512 B

5

1.17

1.34

46.3

-1.16

-0.15

19.4

73

4

4

3

3

4

2

0

ALJ 1513 B

6

1.20

1.39

57.5

-1.09

-0.07

18.3

71

4

5

3

3

6

2

0

ALJ 1513 B

7

1.31

1.54

75.7

-1.02

0.04

13.8

71

3

4

6

4

10

2

0

GOL 1500 A GOL 1506 A GOL 1509 A GOL 1511 A GOL
1516 A GOL 1517 A ALJ 1520 A

8

1.21

1.46

77.9

-1.04

-0.01

15.6

74

6

5

7

4

9

1

0

GOL 1500 B GOL 1507 B GOL 1510 B GOL 1512 B ALJ
1513 B

9

2.85

3.37

85.5

-1.89

-0.38

19.4

78

3

5

4

2

4

2

0

ALJ 1513 B

10

1.73

1.74

105.2

-2.69

-0.65

24.2

83

4

6

7

1

2

2

0

ALJ 1513 B

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.