PDBsum entry 1w0d Go to PDB code:  Tunnel analysis for: 1w0d calculated with MOLE 2.0 PDB id 1w0d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.38 1.40 26.6 -0.29 -0.03 20.0 79 2 4 1 9 0 0 0   2 1.12 1.15 26.1 -0.10 -0.16 7.6 74 1 2 2 3 2 2 0   3 1.18 1.18 26.2 -0.09 -0.21 9.6 72 1 2 1 3 1 2 0   4 1.31 1.48 21.8 -1.43 0.14 20.1 75 3 2 0 4 1 1 0   5 1.34 1.42 17.7 -2.65 -0.63 26.1 89 3 4 4 2 0 0 0   6 1.33 1.42 30.8 -1.98 -0.38 26.1 84 3 4 4 4 1 0 0   7 1.27 1.41 20.9 -1.81 0.07 25.2 76 4 2 0 3 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.