 |
PDBsum entry 1vzd
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 1vzd calculated with  MOLE 2.0
|
PDB id
|
|
|
|
1vzd
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
3 pores,
coloured by radius |
|
4 pores,
coloured by radius
|
4 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.39 |
2.76 |
25.1 |
-0.28 |
0.07 |
18.7 |
74 |
|
3 |
2 |
1 |
5 |
3 |
0 |
1 |
|
UFP 317 A CB3 318 A
|
 |
|
2 |
 |
1.83 |
2.02 |
30.7 |
-1.14 |
-0.32 |
19.7 |
85 |
4 |
2 |
1 |
3 |
0 |
1 |
0 |
UFP 317 A
|
|
3 |
 |
1.84 |
2.02 |
42.4 |
-1.45 |
-0.51 |
20.5 |
90 |
5 |
2 |
1 |
3 |
0 |
0 |
0 |
|
 |
4 |
 |
2.18 |
2.87 |
44.8 |
0.55 |
0.02 |
9.7 |
72 |
3 |
1 |
0 |
6 |
3 |
0 |
1 |
UFP 317 A CB3 318 A
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program