PDBsum entry 1vz5 Go to PDB code:  Tunnel analysis for: 1vz5 calculated with MOLE 2.0 PDB id 1vz5 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.13 1.39 25.8 -1.26 -0.39 14.3 90 5 1 2 3 1 0 0   2 1.33 1.59 15.3 1.09 0.44 9.0 81 2 0 1 7 0 0 0   3 1.14 2.57 18.1 1.48 0.63 7.8 83 2 0 1 8 0 0 0   4 1.18 2.42 18.6 1.43 0.63 8.3 83 2 0 1 8 0 0 0   5 1.14 1.38 21.0 -1.10 -0.29 24.7 90 5 1 1 3 0 0 0   6 1.26 1.42 15.8 -1.02 -0.33 22.9 90 4 1 2 3 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.