PDBsum entry 1vyh Go to PDB code:  Pore analysis for: 1vyh calculated with MOLE 2.0 PDB id 1vyh Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   37 pores, coloured by radius 37 pores, coloured by radius 37 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.51 4.07 100.6 -1.83 -0.48 28.8 81 9 12 5 5 1 1 1   2 1.38 1.60 107.7 -1.17 -0.14 17.7 78 14 5 8 9 5 1 0   3 1.23 1.23 119.1 -2.06 -0.44 29.6 82 14 13 5 5 0 2 1   4 1.62 1.70 129.0 -2.33 -0.44 30.9 78 16 15 8 7 3 4 1   5 1.40 1.39 138.1 -1.72 -0.38 26.1 80 14 12 7 8 3 1 0   6 1.29 1.59 140.5 -2.02 -0.49 23.9 81 10 8 7 5 3 2 0   7 1.72 1.96 141.1 -1.59 -0.37 22.9 83 15 11 10 8 3 2 1   8 1.24 3.59 144.3 -0.97 -0.16 15.5 81 11 7 8 11 5 2 0   9 1.49 1.56 147.5 -1.83 -0.28 24.8 79 20 8 8 9 3 3 1   10 1.25 1.65 152.7 -1.91 -0.45 24.1 83 13 10 9 6 3 3 1   11 1.28 1.53 153.2 -1.61 -0.41 20.0 81 11 6 7 8 1 2 0   12 1.62 1.47 161.6 -2.27 -0.62 30.1 85 12 13 7 4 3 1 0   13 1.23 1.29 163.0 -0.58 -0.16 15.3 90 8 2 6 6 1 1 0   14 1.53 1.58 166.5 -2.12 -0.38 28.3 78 21 15 11 10 5 4 0   15 1.28 1.61 171.0 -1.37 -0.22 21.8 82 15 10 11 12 3 3 0   16 1.35 1.60 172.6 -1.53 -0.40 24.7 82 11 14 6 10 3 2 0   17 1.16 1.50 188.1 -1.45 -0.15 24.2 79 21 14 8 14 7 5 1   18 1.26 1.61 201.0 -1.93 -0.39 26.6 80 18 17 11 12 5 5 0   19 1.29 1.51 213.7 -1.84 -0.54 27.1 85 11 15 7 8 2 2 0   20 1.55 1.42 211.6 -1.94 -0.53 28.1 84 15 15 9 9 1 1 0   21 1.28 1.44 223.5 -1.95 -0.51 27.7 85 20 19 14 9 3 1 1   22 1.45 1.22 228.0 -1.70 -0.33 26.3 79 25 21 10 14 4 5 1   23 1.38 1.43 233.4 -1.66 -0.38 22.9 79 18 12 12 11 4 7 0   24 1.48 1.49 239.1 -1.92 -0.48 26.3 81 22 18 14 11 4 5 1   25 1.39 1.21 284.0 -1.30 -0.16 20.9 79 21 12 9 13 5 4 0   26 1.36 1.56 314.6 -1.86 -0.36 27.7 80 29 27 14 20 5 7 1   27 1.30 1.74 309.3 -2.16 -0.38 29.8 80 38 26 14 18 4 7 2   28 1.31 1.22 367.8 -1.94 -0.30 27.5 80 32 18 11 15 3 6 1   29 0.70 0.62 372.1 -1.56 -0.29 24.3 81 24 19 10 17 4 6 0   30 1.14 0.97 435.2 -1.46 -0.28 20.9 80 26 15 15 16 7 6 0   31 1.60 1.74 42.6 -1.15 -0.02 16.9 80 3 2 3 4 3 0 0   32 1.62 1.63 65.1 -2.74 -0.77 37.8 81 8 7 2 1 1 0 0   33 1.09 1.32 77.2 -2.04 -0.30 27.6 78 12 5 4 5 2 2 0   34 1.62 1.92 96.6 -1.92 -0.32 24.9 82 12 6 7 5 2 2 0   35 1.52 1.68 117.3 -2.11 -0.49 29.4 80 16 9 6 7 3 1 0   36 1.52 1.97 141.7 -1.47 -0.32 23.8 84 12 10 7 6 0 4 1   37 1.51 1.65 162.6 -1.39 -0.41 20.4 85 13 12 9 6 0 4 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.