PDBsum entry 1vyh Go to PDB code:  Tunnel analysis for: 1vyh calculated with MOLE 2.0 PDB id 1vyh Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.18 1.74 18.8 0.59 0.38 11.5 68 2 0 0 6 1 1 0   2 1.20 2.51 18.4 1.20 0.48 13.2 79 1 1 0 5 2 0 0   3 1.22 2.57 18.6 1.39 0.54 12.2 76 1 1 0 6 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.